RNA id: XM_021564878.2


Basic Information

Item Value
RNA id XM_021564878.2
length 5233
RNA type mRNA
GC content 0.49
exon number 22
gene id ireb2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53416113 ~ 53438769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccgtctctcacagttgaagtgtacctatgaaaaaaatgacagacctctacatgctttTGGAGCATCCTTTTAACCACCTGATTGACACGCTGAAAGATGGCGACCGGAAGTATTTCAATCCACAGAAGCTGAATGATGCAAGATACGACAAGCTGCCTCTATCCATCCGTGTCCTCTTGGAGGCGGCCATACGCAAATGCGACGGCTTCTATGTGAAAGAAGAGGACGTCCACAACATCCTAGACTGGAGCGAGCAGCAGAATGTGGCAGAAGTGCCATTCCCTCCTGCCCGGGTCCTGCTGCAAGACTTCACGGGCATCCCTGCCATGGTGGACCTGGCTGCCATGAGGGATGCAGTGACCAAACACGGAGTGGACCCCGGCCTGGTCAACCCTGTGTGCCCCACAGACCTCATTGTTGACCACTCGCTACAGATCGACCTCAACAAATGTGCCATACAGAACGCCCCCAACCCTGGTGGAGGGGATAGCCAGAGCCAGGGGCCTCCGTCTCGCCCCTCCCCCGCCAGACCCACACCCAGAAGGGGGTCCCAGTGTGGAGGCGAGAGAGGCAGCTGCAGCAAAGGGGGCTGCAGTGACACCCCGGGAAGACCCGCCACTGCTGTCCAGCAGATTGAGAACACCCCTCTCCTATGCCCCTTCCATCTACAACCCGTCTCTGAACCTGAAACAGCTCTGAAAAACCAGGAGTTGGAGCTGATCCGAAACAAAGAACGGCTGCAGTTCTTTAAGTGGTGCTCCAAAGCGTTTAAGAACGTGAACGTGGTGCCCCCGGATGTGGGCGCAGTACACCAGCTAAACCTGGAGTACCTGTCTCAGGTGGTGCAGGAGAGCCAGGGCTTCATCTACCCAGACAGCGTGGTGGGCACAGACTCTCACACCACCATGATCAACGGTCTGGGCATCCTCGGCTGGGGTGTGGGAGGGATCGAGTCGGAGGCAGTGATGCTGGGCCAGCCCATCTCTCTGACCCTACCCCAGGTGGTTGGCTGCAGGCTAGTAGGCTCCGTCAACATCCTGGCCACGTCCATCGATATTGTTCTGGGGATCACCAAGCACCTTCGTCAAGCGGGCATAGCTGGGAAGTTTGTGGAGTTTTTTGGTCCCGGCATGTCCCAGCTGTCTGTCCCAGACAGGACCACCATCGCCAACATGTGTCCTGAATACAATGCCACCGTCAGCTTCTTCCCTGTCGACCATGTCACACTCAAACACTTTAAGCAAACAAACTTTACCGAGGAGAAACTTGAATTATTGGAGGCTTATCTGAAGGCTGTGAAACTCTTCAGGAGCTACGAGGACTCGTCAGAAGACCCACAATATTCTGAGGTGATTGAGATCAACCTGAGCTCCATGGTGCCCCATGTGAGTGGGCCAAAAAGGCCCCAGGACAGGGTGGCTGTCAGCAGCATGAAGGAGGACTTCCAGAGCTGTCTCAACGAGAAGGTGGGTTTCAAAGGGTTCCATATCTCCAAGGAGAAGCAGGAGAGCCTGGTGCCTTTCCTCCACGGCGGTCAGGAGTACGAGTTGGCCCACGGCTCTGTGGTCATCGCAGCCGTCATCAGCTGCACCAACAACTGCAACCCCTCCGTCATGTTGACCGCAGGTTTGCTGGCCAAGAAAGCGGTGGAGGCGGGCCTTATCGTCAAGCCTTACATCCGCACCAGCCTGGCTCCTGGCAGTGGCATGGTCACCCACTACCTCAACACCAGTGGAGTACTGCCTTACCTCAGCCAGCTAGGGTTTGAAGTGATAGGCTATGGATGTGCCACCTGCGTTGGAAACACTGCACCTTTACCGGAGACCGTCTCTGAAGCTATCAAAGAGGGGGACTTGGTGGCCTGCGGAGTGCTATCTGGGAACAGACACTTTGAGGGACGCCTATGTGACTGTGTCAGGGCCAACTATCTGGCCTCTCCACCCCTAGTAGTGGCGTACGCCATCGCCGGCACCGTCAGCATCAACTTCGAGAAAGAGCCTCTGGGTGTGACCTCTGAGGGGAAGGAGGTGTACCTGCGGGATGTGTGGCCCACCAGGGAGGAGGTGCAGCAGATAGAGCAGGACAAGGTCATCTCTTCCATCTTCACAGAGCTCCGTGCCAGAAGGGAGAAAGGGAACACGTTTTGGAATAACCTTGAATGTCCAGAGTCTGTGGTTTTCCCATGGGATCCCAAATCCACATATATCCGCTCTCCTTCCTTCTTCAACAAACTTtgtAAAGAGGTCCAGCCGCCCCAGTCTATAGAGAACGCCCATGCCCTACTGTTTCTGGGAGACAAGGTGACCACCGACCACATCTCCCCTGCCGGGAGCATCGCCAGGGTCAGTGCTGCTGCCAAGTACCTGCTGAGCAAACGCCTTACACCACGAGAGTTCAATTCGTACGGCGCCCGGAGGGGAAACGACGCGGTGATGACCCGAGGGACATTTGCCAGCATCAAACTCCAGAACCGGTTAATCGGCAAACCGGGCCCCAAGACCGTGCACATTCCATCAGGCCAGACTCTGGACGTGTTTGAGGCAGTAGAGCGCTACCAGAGAGACGGGATTCCCCTCATCATCCTGGCAGGGAAGCAGTACGGCTCAGGAAACTCTCGGGACTGGGCGGCCAAAGGACCCTACCTACTGGGTGTGCGAGCTGTCATAGCAGAAAGCTTTGAGAAGATGCACAAGAATCACCTGGTGGGCATGGGCATCGCGCCCCTCCAGTTCTTGCCAGGCCAGAGTGCCGATTCGCTAGAGCTCTGCGGGAAGGAGAAGTTCACTATCACTCTACCAGAGGACCTGTCCCCAAAGCAAATGCTGACTGTCAAAACTAGCTCTGGAAAGACCTTCAGTGTGACGACTCTGTTTGACAACGAGATGGATGTGGCCTTTTACCGGCATGGCGGGCTGCTGCGATACGTGGCTCGAACCATGCTCTAGACTAGATCATTTTATCTTAACTCCGCTTTAACCCCAAGGACTGATTTTCTTTCTGTGCTTATATATGGGGTTAGTCATGCTCCAACCATCTAGTTGAATGTGTGGAAATGGGCCTACTAAACTAGCTTGCTCAAGTAGGGAAGACACAGAAGCTAATTCACAGAGATTATGTACCCTCCCCCGCCCACAGACAAATGCCTCCCAGGTCTAAACCGAACCTGTGCTGTTTTGAACTGCTTGTGACCAGTCCAGTCTGCTCCACTTCAGACTAGCTCAGACCAGCCCAACATTCTTTCAGCTCCAAGACCAGCTCAGTCCTCTTTGACGATATCAATCTGCTTCAGCATTTAGACCAACACAATCCACTTTAGAACAGATTGATATTTAACGGCTGAGCATGCCCCATTCAGAACAACCAGCTCCAGCAGGGTGCCTGTTCTATAGGGTGGAACATTCCGAACGTTGCAGTGTAGAAGTCCAATGTAAAGCATGGGCATAACCTGATAAAGTCATTGATTTTTATCTGTGTCAGTCGGAAAGTTTCATCTCTTTTGAACAGGTATCTGCACTTTTTATCAGCGCTTGAGCTTCCTAACCACATCAGTCAAGTTCAATTCTGAAACCAGATCGATCTGCTTTAGCCGACCAGATGAGAGACCTTGTGCCCAATTGCAACccaactctttctctctactccttTGATGCGTATGTAGATCTGTACAGATTGGATTGCTGTAAGCAACAGGGAGAATATTCTACTTTGCCTACATAATGTAATCTTTTAAGATTTGGATTTGGAATCGTGCACCAGTCTTGGCTGTGCATATCTCCTGCAGACATCCTTTACAACAGAGTATTTCCAGGGATGTCCTCTTTTTCACTTATGGTCAGAATGAGAATGTGGAGGAAACAGTTGTTTTTTGCTCTCCATGTCTGCACAGCTTCATTGTCTACTGGTTGAACTGATTATCTGACAACGGGGTTAGTTTCCACACCCAAATACTATCGATTTCACTGGTGCTGAGGCAGAGGTGTCAAAATGTCCTTCGCTTTGGTGCTTCTAATGACAATTTGCGAGGTCCTCTGTAAGATGCATACAATCTAGAACTGTATATCTCTATATATGGCTCTGATAGTCTAGTTTGGTCTACAATATCTCATTACATGTTGCTTGTCAGGTACCGGTATTTAAGGTTTACAAAGTAGCGGGCAACCATTGTTCGTGTGTTGGTATTAACACTGTGGTTGGACATTTTGCATGTTAAGGCTGTCTGTGTGACATTGTTGCCTCAGTTGTCTTACTCAGATAATGGCACTATATGAAACTTTATTCATACAATATAATTGAGACTTCTGGAATGTGGATTTGAACATTAGCTTTTAAACAAATACTTTAGTGGTCATTGAGATTGTCAAGTATTTATTGTCATACTAAATTCAAACAGTTGACTGTCATGTGCTGTTTGAAAACccaacatatttttattttttttactttccaAGAGTGAACAATGCCGTTGTGTTGCCGTGacacatttccaaagcaagtttAAGCAGAGAACAGAGTTTCCTGACCTGTAATGTCATTCGTTTTGAGGGTGCATACACACACGTTGATGTCTTTGGTTGTCAAACTACAGAGCTTCAATTAGCCTGATTTGGGCTTATTGGTTtcctgtgttttgttgtgttttgaTTGGGTACTTGAGTCCTGGCCGCTGGTCTGATCAAGATGGTGCAACACTGAAGAACTTTCAGAATCAGGTAGAAATGTCTAGTGTAGATACGATTTAATTGTCACGTAGAACATGTAATCAAGTCAACTGTGttcatttctatctgcaatgttaTTCTGAGTATTTCACCTCACTGAGTATACCCCAGTTTTATCTTAATGCAGTTTCCCTTGAAAGTGTGATCCGTTCTATTGGCTTGACTTCAAAGGTATGCGTCTCACTGACTGCTTTGGGGATTTTAGGTTTTTCCCTGAGTACAAGCACACGGTAATTTAGTACATTTTAATTAATGGATGAcgtatgtgatgttattatttGTGTGTAGGTGTTGTTGGGGTACTGCTTCATTTTTCATTTTCACAAAAAATGTACCATATGCAAACAAAGCAAGTGCAACATTGCACATAACAATAAGTACCTGGTTAATGCAGAGaagtggtaaaaaaaataataattaagtaCCGAATACTGAATTATAACAGATATTGTATATAGTTTTTAATAAATGATTAAAATGAAAGTTTTACTGTAAAGAAACTACAAAAAAACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K22416 IREB2; iron-responsive element-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180660 lncRNA upstream 5047 53412520 ~ 53412744 (+) True G158182
TU180645 lncRNA upstream 26544 53390250 ~ 53391247 (+) True G158167
TU180572 lncRNA upstream 74265 53312024 ~ 53343526 (+) True G158109
TU180440 lncRNA upstream 288770 53121169 ~ 53129021 (+) True G157986
TU180171 lncRNA upstream 324694 53092833 ~ 53093097 (+) True G157726
TU180670 lncRNA downstream 5275 53444044 ~ 53445745 (+) True psma4
TU180691 lncRNA downstream 58088 53496857 ~ 53497265 (+) True G158212
TU180697 lncRNA downstream 62813 53501582 ~ 53501878 (+) True G158218
TU180989 lncRNA downstream 104592 53543361 ~ 53543986 (+) True G158490
TU180991 lncRNA downstream 105760 53544529 ~ 53544750 (+) True G158492
XM_021564860.2 mRNA upstream 47411 53351100 ~ 53370380 (+) True wdr61
XM_021564807.2 mRNA upstream 132367 53267186 ~ 53285424 (+) False sin3aa
XM_021564892.2 mRNA downstream 5279 53444048 ~ 53466316 (+) False psma4
XM_021564901.2 mRNA downstream 10881 53449650 ~ 53466316 (+) False psma4
XM_021564909.2 mRNA downstream 11489 53450258 ~ 53466316 (+) False psma4
XM_021564940.2 mRNA downstream 198536 53637305 ~ 53651854 (+) False rbpms2a
XM_036950411.1 mRNA downstream 198536 53637305 ~ 53651854 (+) False rbpms2a
TU178397 other upstream 1593609 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 1996669 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2000673 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2095358 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2250617 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 582839 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 914214 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 1289527 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2507374 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2806275 56245044 ~ 56252598 (+) True G161687

Expression Profile