RNA id: XM_036950502.1


Basic Information

Item Value
RNA id XM_036950502.1
length 3736
RNA type mRNA
GC content 0.48
exon number 14
gene id snx1a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53852828 ~ 53868273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGCCCCGAATTGTAGGCTGCACTTGCACACCATTGTTTGAGCCGGTAGGTGGTGTTATTTTTTTCTGCCTCCCCTCAGTCTCAAAAGTTTTATatgatgctgtctgtctgtttgcgtTGAATGAAGATGGCGACCAGTTCAGAACGTAGTCCCCCACCCTTTCCCGAGGACCTGGAACCGGAGCCTGACGAAGTTGGAGACCAAGACAGTGATGACGGAGAAGACATTTTTCTTGGCACAGATAACCCATTGGAGATAAAGATGGACCCTTCGCTGTCTGTAAGTGACATCACAAGTTCAACCAAACCACTGAGTGAAGCATCTAGTCCTCCAGTGATGGACCTCCTTAGTGAACCAGCAAGTGAGGCATCTAGTGCGCCAATGGTGGACCTCCTTATGGAACCAGCAAGTGAGGGATCTAGTGCTCCAATGGTGGACATCCTTAGTGAACCAGCAAGCGAGGCATCTAGTGCGCCAATGGTGGACCTCCTTATGGAACCAGCAAGCGAGGGATCTAGTGCTCCAATGGTGGACCTCCTTATGGAACCAGCAAGCGAGGCATCTAGTGCTCCAATGATGAACCTCCTTATGGAACCAGCAAGCGAGGCATCTAGTGCTCCAATGATGAATCTCCTTATGGAACCAGCAAGTGACGACTTAAAGGAGCCTCCCAAACCTGACATCGACCCATTGGCTGACATTATCAACGACACTCCACTCAGTGAAGGCAAAACACCGGTTGCTGCGATGCCCCAGGAGCCACCGAGCGACCTCTTTGACGATGAGCCTAGCGAACTTTTCGCTGAACCACGACAAAGTAACACCGCCAAGCAACAACAAACTAGCATCTTTGACGAACCTGATGAGGACCTCTTCAGCGAACCACTGGGTGAGGCCTCGAAGAAACCCCAGAATGATTTCTTCAAAGAAGCACTTGCACCAGTGGCCAAAGCTAGCAATGTCTGCGGTCCTCTGAGTGACAACTACAATGAGCACCCCACTGATATATTCACTGAGGAGGCTATCACTACTCTCCCTAGTGCAGTCAGTACTGTTTCCGTCAACTCCAAGACCAACGGAGTCCACTCCGATGAGGAGGAACCTGATATATTTGCAGAAGCCACCGTAGAGCTGTCTCTGGACAGCCCTAGGAATGACAGAAAAAAGAAAGAGGCAGCCAAGCCCTCTGCGTCTGCGTCTGCCCCTGCTCCCTCAGTCTCAGCAAGTGCTTCCAAACCGCAACCCAAGACCCTGGAggagTTGGAAGAGGAGGTTGAGGATAAATTTGAGCTGAATATCTCAATAACCAATCCAGAGAAAGTTGGGGATGGCATGAACGCTTACATGGCCTACAAAGTCTCCACACAGACCACGCTGCCCATGTTCCGCAGTAAGACGTTCACAGTGCGCCGGCGTTTCAGTGACTTCTTAGGCCTTTACGAGAAGCTCTCGGATAAACACACACTGAACGGCTACATTGTGCCCCCGCCGCCTGAGAAGAGCATTATGGGCATGACTAAAGTCAAAGTGGGAAAAGAGGACAACTCGTCGGCTGAGtttgtggagaggaggagggcggcTCTGGAGAGGTATCTGCAGAGAGTGGTGTTCCACCCATCACTGCTACAAGACCCTGATGTCAGAGAATTCTTGGAGAGAGACGATatgcCCAGGGCTCACAACACCCAGGCTCTGAGCGGCGCCGGCTTCCTGAAGATGATCAACAGGGCTACAGACTCCCTCAGCAAGATGACCATCAAAATGAATGAGTCGGACGTGTGGTTCGAGGAGAAACTGCAGGAAGTGGAGGCTGAGGACCAGCAGCTGAGGAAGCTCCACATCATGGTGGACTCTCTGGTTGGACACAGGAAAGGTACGGTACAATGGAATACAAGTGTTTTATCGGACAGactcagacaaacacacaagGCTATAAGCAGTGCATGGCCACCTATTGTGTGTGTGGAATGGAAATATGTCTTCTTGCTGTCCCTTTTTCCCaccaaactacacacacacacaatgggctTTAAGCGGCACATGCTTAACTCCCCCGCTCTACTTCCCCCAGAGTTGTCGGTAAACACGGGTGGCTTTGCCAAGAGCGTGGCGATGCTGGGCAGCTCGGAGGACAACACGGCCCTGTCCAGAGCCCTCTCCCAGCTGGCCGAGGTGGAGGACAAGATGGAGCAGCTGCACCAAGAGCAGGCAGCCAGCGACTCGTTCTGCTTCGCCGAGCTGCTCGCCGACTACATCCGCCTGCTGGGATCTGTCCGGGCCTCCTTTGACCAGCGGATGAAGACGTGGCAGCGCTGGCAGGATGCTCAGAACATGCTGCagaaaaagagggagacagaggccaAGCTGCTGTGggccaacaaacctgacaagCTGCAGCAGGCCAAGGATGACATCACTGAGTGGGAGGCCAAGGTGACTCAGTATGAGAGAGACTTTGACAGAGTGTCAGCTACAGTTCGCAAGGAGGTGCTCAGGTTTGAGAAAGAGAAGGCCCGCGATTTCAAGAAACAGATCATCAAATACCTGGAGTCTCTGCTACAGTCGCAGCAACAGCTGATAAAGTACTGGGAGGCATTCTTGCCAGAGGCAAAAGCGATTGCGTGATGGAGTCCGCCAGCCAATggaaagaaagaagaggaggcGGCCTTTTTTTATACACTTTACCTCTCGCCTATAAACCAAGAAAATAACCAGAGAGTGCGCTGCAAATGGAAATTTGATTCGTTTTTTAAAATCATCCTAAACCTATAGCGCTTCATTCTAACTGTTGTATTAATAATTGTATATTTTCATTTAACCTTCCACATATATTTTCTAAATGGTGAAAACAAACTTTAGCTCTTTTGTGATGGTATGGATGTGTGTGAGGGCTGGGTGTCCAACTTGCGTATGCAATGTTAATGATTCCATTAGTTTCCACTTCAGAACAGGAGAAATCATTGTTCTCAGTGCAACATCCTTATATTAACAATAGGAGATTTTTTACACATTAGCATTGTTAATAATTCACAACAGAGTGCCCATCACACACATGACACACGAGGCAGAGTTTCTGGGGCTTTCAAGGGGATCTAGTTGAATTAAATGCCCAATTCCAAATCAAACACCAGCACCCTACTCCCCATGCACTTCTTAAGAATCAAGATAAAGGATTGGGTATAAGTAAGCAATAATAACACAGAACATCCACCTAGTCTTTCAAAAGGCTTGGCATTGTTGCTATTGTGGCTGGGGGTCCATTTTGAATTGAGTCAAAGACACATGTGGATCCACATTCAGCCTGTATAATTTGGGAGGATCTTGAGATGTTTAAATTTCTACATTTTgaatcaaactttttttttttattattatacatGATCGGTTCAATCACTGTGGACATGACATCAACCCTCCAAAATAAAAGTCAAGAAAATAAGAACCAAGGTTGATAAGTGTGACAAATAATGTAAAACGTTTAAACCAAGTCAGTAACTGTTAAAAGTACTGCTGGTCCACATGGAAAGCACGTTAATTTCAATGGAAGCTGTCATTATATAACAGTTACTGCAGATTGTGATTAATTTGGATGAATGGCATCGGATTTGGGGGGAAAATGAAACCGTTTCAGGGAAATACTCCTACATCAAAAGGGCAATCAAATCTTCCCAACGTGCATTGTAGTTTTCACTTTGCATGAGGAACCACATCCATTAAAATGATCACTTACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181218 lncRNA upstream 27105 53825402 ~ 53825723 (+) True G158707
TU181217 lncRNA upstream 28052 53824537 ~ 53824776 (+) True G158706
TU181126 lncRNA upstream 162425 53690202 ~ 53690403 (+) True G158618
TU181125 lncRNA upstream 163232 53689174 ~ 53689596 (+) True G158617
TU181124 lncRNA upstream 163848 53688680 ~ 53688980 (+) True G158616
TU181244 lncRNA downstream 21487 53888544 ~ 53888842 (+) True G158731
TU181245 lncRNA downstream 21847 53888904 ~ 53889239 (+) True G158732
TU181260 lncRNA downstream 47917 53914974 ~ 54010809 (+) True G158742
TU181207 lncRNA downstream 102397 53969454 ~ 53970875 (+) True G158696
TU181294 lncRNA downstream 148698 54015755 ~ 54016247 (+) True G158776
XM_021565070.2 mRNA upstream 29194 53797226 ~ 53823634 (+) False cpeb1a
XM_036950481.1 mRNA upstream 29194 53797226 ~ 53823634 (+) False cpeb1a
XM_021565056.2 mRNA upstream 29194 53797227 ~ 53823634 (+) False cpeb1a
XM_021565063.2 mRNA upstream 29194 53797228 ~ 53823634 (+) False cpeb1a
XM_021565078.2 mRNA upstream 29194 53797228 ~ 53823634 (+) True cpeb1a
XM_036950532.1 mRNA downstream 459 53867516 ~ 53890738 (+) False snx22
XM_021565156.2 mRNA downstream 5869 53872926 ~ 53890738 (+) True snx22
XR_002468855.2 mRNA downstream 27077 53894134 ~ 53896406 (+) False LOC110491599
XR_005037059.1 mRNA downstream 27089 53894146 ~ 53898191 (+) False LOC110491599
XR_002468853.2 mRNA downstream 27116 53894173 ~ 53896406 (+) True LOC110491599
TU178397 other upstream 2028646 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2431706 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2435710 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2530395 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2685654 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 154551 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 485926 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 861239 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2079086 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2377987 56245044 ~ 56252598 (+) True G161687