RNA id: XR_002468853.2


Basic Information

Item Value
RNA id XR_002468853.2
length 1974
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110491599
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53894134 ~ 53898191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtcaaactccacgTGTAAATTGCCCCTCCCACTTCGTGGATTGAACTCAATTGTTTCTTCGTCCTAAACCAAAGCGATCATGGCCGTTTGAGACTGAAAAGCCCTATACGGATTGACCATGCAATGCATGCTTTCGGCTAGGTTGAAGGTGGGTATATTTTAAGGATGCACACCAAACAACTATGGTTTGCATGCCCTGCAGAAGGACTCCATCATGCAAGTTTTATTCCGTTGGTCCCCAGTGGATGTCAGTATACCGGCCGACCATAGACTGCTGGTTATGTACGGTCAGTATATTTTGATAACCATTATCACGATCATAGCTGACACAGATAGCTAATGTCAGCCTACTTCAATACAACTCGGATTTagcttggaaaaataacatttcaAAAGAAGACAAATACTTActtaaatacaattattttgtcATGATTGTGATGTCGCCATATTAACTTCAGATGCAGATTTGAAGGGACCGCtgtattttagctagctaacattagcattgtTAGCTATTTTTGACAAACTTTGATAGTAACAGTAATGAGTTGCAACCGATCTAAAGTAAATTTGACATAATTATGGCAAAGTTGTTTGCAACTAATTATTTGCCTACTTTGGCAATGTCATATTGCCATGCCACTCGAAATTAGTGTAATTTAGACGAAACAATCACAATAGCCTCTGAGGCGCAGCACATGTCTTCTAGGGCACAAATAAATATTGGATGCAGTAATGGCGATACTAGCGAACTCATGTCTGACTACAACAGTGTCCCAACTAGCAGTAACACACTCAGTCAATCTACATCTGTAAAGCATAGAAGTAGCTTTCAAACGAGATTACCTTATTTCTCGAGCTGTGTTTATAATTTAGGTAGGATGACAATCGTTGACCCTGTTTTTATGTTAAACAAAGCATAATTGGGTGCCATACTGATCCCGTGGTCATGAACGGATGCTGGGACCTACCAGAAGGAGCAACGCTTgtcaggcaagacctcagaataaGTGTTTCACAACAAGTTTCACAACAAGTACTCTTGTGACACCTCATCCATTGTTGCCAGTCTCCCTCAACTCTGATGAAAAGGACACACCGTCATGAGGCCTCTGACCGTGAGTTACTGCCCTGACGACACAGATGGCTTCATCGACAGGCACTTCCAGTCAACACCACCTAATAAGATTGGCTGCTGCAGTTGTTTGAGAGATGTCCAGTTTGCAGCTGAACGTGCAGCATAGAGAAGACAAGCAAGGGGTCCCTCATCAGCATCATGCAGACATGCCCTCACAGTgagcattcctatgaatggaacagttgTGACTGACAAGTATCCGACCAGCGACCTTCACTTGTCAGCGGCAACAGCTTTCACAGGATCATCATTTGTACAAATACAAAGACTTAATTATTTTGATACATTTGATTACATGTAAACTGACATTAGTTGTTGCTTATTTTCTACTTCTTAGTTGCGTATAATGTCCAGGGCATAACCTAGCCTGGTTGAACCAGCCTGATCCCTGTGTTCACCATTCTATTTCACTTCAAATTTTATAtctgaagtgaaataaaaaaaggtgAATGGAGCAATCAGGATATTTCTACCAAGCtaatcataaccaccattgataatgtaatcagtgctgtgtgtgtgtgaccgaccAGTATCTTTGAGGGACCAGTAGCTGATCTACGCTACTATGTCCATCAATAGGGCTCTGGCAAAGACCTCACCTCCAGCCTCACATCTTGCCTGCTCACCAACAGTCTTTGATGGGAAGAACAGAATTAGGTTTAGGCTGACCTGTTTAAACTTCAACATAGGTGAGATCTGACAcacatccccctcttcaaagggggtgacactctagacccaaactgctacagatctatatctattctaccctgcctttctaaggtctttgaaagccaagttaacaaacagattaccgaccatttcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181245 lncRNA upstream 4934 53888904 ~ 53889239 (+) True G158732
TU181244 lncRNA upstream 5331 53888544 ~ 53888842 (+) True G158731
TU181218 lncRNA upstream 68450 53825402 ~ 53825723 (+) True G158707
TU181217 lncRNA upstream 69397 53824537 ~ 53824776 (+) True G158706
TU181126 lncRNA upstream 203770 53690202 ~ 53690403 (+) True G158618
TU181260 lncRNA downstream 18568 53914974 ~ 54010809 (+) True G158742
TU181207 lncRNA downstream 73048 53969454 ~ 53970875 (+) True G158696
TU181294 lncRNA downstream 119349 54015755 ~ 54016247 (+) True G158776
TU181299 lncRNA downstream 131252 54027658 ~ 54028060 (+) True G158781
TU181301 lncRNA downstream 133218 54029624 ~ 54029860 (+) True G158783
XM_036950532.1 mRNA upstream 3435 53867516 ~ 53890738 (+) False snx22
XM_021565156.2 mRNA upstream 3435 53872926 ~ 53890738 (+) True snx22
XM_036950499.1 mRNA upstream 25900 53852828 ~ 53868273 (+) False snx1a
XM_036950509.1 mRNA upstream 25900 53856243 ~ 53868273 (+) True snx1a
XM_036950519.1 mRNA upstream 27116 53852828 ~ 53867057 (+) False snx1a
XM_021565199.2 mRNA downstream 9528 53905934 ~ 53926823 (+) False bbs4
XM_021565183.2 mRNA downstream 9529 53905935 ~ 53926819 (+) False bbs4
XM_021565191.2 mRNA downstream 9532 53905938 ~ 53926812 (+) False bbs4
XM_036950560.1 mRNA downstream 13686 53910092 ~ 53926813 (+) False bbs4
XM_036950566.1 mRNA downstream 13960 53910366 ~ 53926815 (+) False bbs4
TU178397 other upstream 2069991 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2473051 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2477055 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2571740 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2726999 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 125202 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 456577 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 831890 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2049737 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2348638 56245044 ~ 56252598 (+) True G161687

Expression Profile