RNA id: XM_036951010.1


Basic Information

Item Value
RNA id XM_036951010.1
length 5558
RNA type mRNA
GC content 0.54
exon number 18
gene id acanb
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56032490 ~ 56056380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaAAACTTGGTACTCCGTTTGAATAAAGCTTCCTTCAACTCACAGCACATCTGGGAGCAGCACACAGTCAGAACACATAAGGATTTGGCTCACAGGTTAGAGTCACGACACATCAACGGTAAACCATGATCTCCTTGCTCctactgtgtgtgtctctgccctTCGTCACCTCAACAATATCATTTGAAGACCCTAGCGATCTCGACAGTACCTTGAGTGTCAGCATCCCCATGGACGTGCCACTGCGCCCTCTGATGGGCACGAAGGTGGTGGTGCCCTGCTACTTCCACGACAACCCAATCAACCACCCGGGCACGCCCACTGTCGACCCCCTGTCCCACCGCATCAAGTGGACATACATCACCAAGGGCAAGGCCACCCTCATCCTGGTGGCGTCGGAGGGCAAAGTTCACGTGGAGACGGAGTACCTAGACCGGGTCACCATGGCCAACTACCCGCTGGTGCCCACCGACATCACCTTGGAGATCACGGAGCTGCGCTCCAAGGACTCAGGCACCTATCGCTGTGAGGTCATGCACGGCATCGAGGAAAACCATGACTCGGTGGACATCCAGGTTCAAGgtgttGTGTTCCACTACCGAGCCATCTCTACACGCTACACTCTGAACTTTGAGAGGGCCAAGGCTGCCTGTATCCAGAACAGTGCCACCATCGCCACTCCAGCCCAGCTACAGGCTGCCTTTGACGATGGCTTCCACCAATGTGACGCCGGTTGGCTATCTGACCAAACAGTCAGGTACCCCATCCATGAGCCTCGTGAGGGTTGCTTTGGAGACAAGGATGAGTTCCCGGGCGTGCGAACCTATGGCGTGAGAGAGGTCAACGAGACCTACGACGTGTACTGCTTCGCACAGAAGATGTCAGGCAGAGTGTTCTACTCCATGTCCGTGGAGAAGTTCGCCTTTTACCAGGCAATGGACCAGTGTGCCAAACTAGGGGCCAAGCTGGCCACCACAGGGCAGCTGCACCTGGCCTGGAAGGCTGGCATGGACGTGTGCAACGCGGGCTGGCTGGCAGATAGAAGCGTCCGCTACCCTATCAACATTGCCAGGCCGCAGTGCGGTGGAGGACTACTTGGAGTGAGGACCGTGTACCTGTTCCCTAACCAGACAGGCTACCCCTACCCAGACTCCCGCTACGACGCTATCTGCTACCAAGAAGAAGACGGCGAAGTCAAGACGACCCCGTTCCCAGAGGTGGCCACCATCACAGCTGGCCCCATGGTTTACCTGGGGCGTACCACCGCCCCTGAGGCTGAGGCACAAGGGGAGGTTCTGACCCAAGCCCCCCTGGACACCACCAGCATGGAACTGCCCTTACCCATCCTCCCCAGTGTGAATGACACGTATGCCAAGGTCACCCCGGTCGTGGGGGAAGAGATCATCAGCAGGGTGACAGCTAAACCTAATGTGGCCGCCGAGTTCCCTCGTGACAATGACACTGCCATGTCTCCTACAGGTGTAGTGTTCCACTACCGTGCTGGCTCCAGTCGCTATGCCCTGTCCTTCGTGGAGGCCCAGTTGGCCTGTCAGAGTGTGGGTGCGGTCATCGCCAGCTCTCAGCAGCTCCAGGCAGCCTATGAGGCAGGGCTCCACCACTGTGATGCAGGCTGGCTCAGGGACCAGAGCGTCAGGTACCCCATCCTGTCTCCCAGAGATAAGTGCTCAGGGAACCTGGAGCATCTCCCAGGGGTGAGGTCCTACGGTCTGAGACCCGCTACCGAGCGATACGATGTCTACTGCTATGTGGACCGCCTCAAGGGGGAGCTGTTCTACACCAGCGACTATGACAGCTTCTCCTACGAGGAGGCCGTGGCCCACTGTCAGAAGCTCAACACCACGCTAGCCACCACAGGGCAGCTCTATGCCGCCTGGAGACAGGGCTTTGACAAGTGCCGTCCAGGCTGGCTGCAGGACCGGAGCATCCGCTACCCCATCCACAACCCCAGGCCCCACTGTGGAGGAGGCAAGGCTGGGGTACACACCATCTACGCCTTCCCCAACCAGACGGGACACCCTGACCAGCACTCCAGATACGACGCATACTGCTTCAGAGctGAACCTACGATTATTCACACTGAAACCAGACTCAACGTTACTGTAGTTGTCGAGGAAGAAATGATCAACATGACAACCAGAACGGACCAATTGACTCCTGTGAGCCCCATCGTACCACCTGTATCTGTGGATGTGTCCGGTTCAGGCTTAGCTGAGCATTCTACCAGTGGTAGTGGCAGTGGAACCCCTGGTAGCGGAGATACATCTGGTGGGGCCAGTGGCGAGGGCTCCGGGTCTGGCTTCCAAGTCACATTCGAGGGCAGTGGGCACATCTTGTCAGGACAGGGCTCTAGCTCTGGAGGTCTACAGGAGGCAGTAGAGGGGAGCACCACTGTCACTTACACCGGGTCTGGGAATAGTGGCTCCGGGGTGGGGGTGGGAGAGTTCAGCGGTGGGCTACCGTCTGGTGTCCTTCCCCACTCCGGTAGTGGCAGTGGGGTATCTGGGGACCTGAGCGGTAGCGGGGACTCTGTCATCATCATGGTGGGTGGAGAGATGGTGGACATCTCCAAGCAGCAGCCCACCGGACAGGAGTTTGGACAAGGAGGTGTGGATGTCAGTGGCTCCAGTGGAGTGTCCGGATCGGGTGGCTTCTTCAGCGGGGATGTGACCAGCACTTCTGGCTCCGGACTTCCCGACATATCTTTCGAGCATTCAGGTCTCATTGACCTGACCGAGAATCCCTCGGGAGAGCAGGAGGTCTCTGGCTACCAGCCCTTCGCCTCCGGTTTTCCAAGCGGTTTCCCCTCCGGTTATCCTTCCGGTTTTCACAGCGGCTCTGGATTCCCATCCAGTGGTGACGGATCCAACTCAGGCCATGAGGTCATCTTCCTGACAGAAGACGGGATGATGGAGGTGACAACACGGCGGCGTCCGGAGCAGGGTCGGGGCTACGTAGAGGTCAGTGGAGACGGCAGTAGCCAGCATGAAGGGAGCACCTCAGCCAGTGGGCTCTCCCTGGGGGAGTCAACGGTCGCAGAAGGTGTGGTGCTGCCCCCTGGGTCTACCATGACTTACCCAGAGCATATCACCTATCTGGGAAACACGGGAAGAGGGGATGACCTGGACCTGGTGGAGGAAGGCCAGGAGCTGGAGGGCCATGAGCAGAAAGGGCAGGAGCAAGAAGGACTGGAAGGGCCCATGGAGACAATCAATGTCACGGCACCATCTGCATTCTTCTCTAGCCCAACAACAGCAACCGCAGTCTCAATGGTGACCCCTGTTGTGGTGGAGGAGCCTGCTGTAGTTGACGCTACTCGTGACCTTTGTGAGCCTAATCAGTGTGGCACAGGCACCTGTTCTGTGCAGAATGGCATTGCTTTGTGCCAATGCCCACATGGATTCACTGGAGAGGACTGCAGCACATCACTGCAGGGCTGTGCCGAAGGCTGGGTGGAGTTCATGGGGAGCTGCTACATGCACTTTCTAGAGAGAGACACCTGGCCCGACGCCGAGCAGCGCTGCCAAGAGCTCAACTCCCACCTGGTCAGCATCACCTCCCAACAGGAGCAGGAGTTTGTCAACTCTAACGCTCAGGACTATCAGTGGATTGGACTCAATGACAAGGACGTGCAGAATAAGTTCCGCTGGACAGATGGGAGTCCATTgGAATTTGAGAACTGGAGGCCCAACCAGCCGGATAACTACTTTAACTCTGGAGAGGACTGTGTCGTGATGATCTGGCATGAGAACGGCCAGTGGAACGATGTTCCCTGCAACTACCACCTGCCCTTCACCTGCAAGAGTGAACCTGTCGTGTGCCACTCCCCTCCTGAGGTGGACAACGCCAGGCCGATGGGCAGCAGAAGAGACCGCTACCCCGTCAACTCTATCGTCCTCTACCAGTGTGATGCAGGCTTCACACGGCGCCACCCGCCTGTTGCACGCTGCCTTCCCGACGGGCGGTGGGAGGAGCCACAAGTGGAGTGTATAGGACctggTGCCACCCCCAGCAACCGACTACATAAGAGGTCCATCAGGAGACGGTCTAAAGCAACCAACAGTCGGTCATGGCGGGAGCTTCTCTAAGCAGGACTGAAGGGACACACTAAAAGAGAACCAAATGGACCGCTCTTGTAAAGAAACATTGATATTCAATGCCATTTTGCCTGACCTAAAGAGATAAAGTTCCCAACAGGGGTGGAAATGGGGAAAAGTTACTTTGGGAACCCACCAATGAAATAATCCTTGAATTCACCTGTAGCTAATTTTTACATGTTAAAATGATTGCATTCCCTCATTTCCACCCCTGATTCCCatcatgtgtatatatacacatataaacaCCAAAGCACATTAGACATGATTTTGATAGTCAGACTGACAATGTTGATCTCTGAGTGTCACTCTGTGCCTTTGTGGGGGATATTTgggcagtggttctcaacctggGGTACCAGCAACCCTGGGGGTACCTGGCCTTTCCACAGGGGGTATTTGGGAAGACTCGAATATGTATAATTGAGAGGATACTTTGTGCAGAGCGTTATGGACCTGATTTCGCCGTAATAAACGATGCCTTTCTAGTGCACGCCTTTCCtatgcacttctcagtagttggtactCAGACTTACCTTATGAAGGTGCGTAATGGGGTTTGCAGACGTGGTTTCCTTACGCGCAAAGAAATATATTGGTTTGTTTCATCTGGAAAGTTGTCATATTCAATTTCAATCCATGAAAAATTGGAAGGTGGGAAAAAAAAGTGTACAATAGGGGTTGAACAATAGTACTATAAATCTACCATAAGCATTACTAATCATCGAACTGTATGACAACGCTCCAGTCGTTATGAACCGTTCGCTGAGCTCCAGGTTTAACTTGCTAAGTGTGGTCTgagttccataatgattcaaataggctacatgtccgaAATGATTGCACAATGTTAGACTAATGCTAGCGACACTTATCACCATTCAGAATTTTTTATGCGGGCGCCCTGTGCTGCCCCCGGCAAGATGCCGCCCCGggctgcccatgtcgcctatacctaaatccgccactACCCTCAGGAACAGCTTACACGGACGTGAAAGAGAACTAAACACTAAGGTGACAGTTGTAAACGTGGGTAttgtatgtgggtattactgaccCCGAGAgcggctaatatttaacatgatacatATTTTTGTATGAAACAGAAAAGCCTGGGCATATAATTAAACAATTCTAAAGTGCATACATCAACATCTGCAGGTTCAGCCATACAGAAGCCTATAAAATGTTCTcgtatggggacagccgaagaacccttttaggttctagatagcactttttggGGGGATTTTCAGAGATCATAAGGAAAAACTATCTAAAACAATTGCAGTGTATTTACAATTCCCTTCTCCAAATTGATTGCTCATTTATAGAGCTCTTACCAATAGCTCTTATCCATTTATAAACGACCATGCATGGAGAATGCTGTTATTTATATCGAGGGAAAAAAATGAGGTACATGCTTGGAACCAGCACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184205 lncRNA upstream 577 56031708 ~ 56031913 (+) True G161494
TU183286 lncRNA upstream 12885 56019342 ~ 56019605 (+) True G160635
TU183270 lncRNA upstream 31449 56000383 ~ 56001041 (+) True G160619
TU183234 lncRNA upstream 98680 55933127 ~ 55933810 (+) True G160589
TU183016 lncRNA upstream 202858 55827760 ~ 55829632 (+) True G160381
TU184276 lncRNA downstream 33439 56089819 ~ 56090069 (+) True G161559
TU184311 lncRNA downstream 74603 56130983 ~ 56131664 (+) True G161594
TU184388 lncRNA downstream 137314 56193694 ~ 56194674 (+) True G161662
TU184389 lncRNA downstream 139930 56196310 ~ 56197436 (+) True G161663
TU184396 lncRNA downstream 143726 56200106 ~ 56200510 (+) True G161667
XM_036950930.1 mRNA upstream 100906 55861422 ~ 55931584 (+) False LOC110491898
XM_036950939.1 mRNA upstream 100906 55861422 ~ 55931584 (+) False LOC110491898
XM_036950947.1 mRNA upstream 100906 55886540 ~ 55931584 (+) True LOC110491898
XM_036950922.1 mRNA upstream 175190 55841445 ~ 55857300 (+) True scamp2
XM_036950849.1 mRNA upstream 212972 55660235 ~ 55819518 (+) True myo9ab
XM_021565941.2 mRNA downstream 90081 56146461 ~ 56170964 (+) False LOC110491996
XM_021565950.2 mRNA downstream 90081 56146461 ~ 56170964 (+) False LOC110491996
XM_021565922.2 mRNA downstream 90084 56146464 ~ 56170964 (+) False LOC110491996
XM_021565931.2 mRNA downstream 90084 56146464 ~ 56170964 (+) True LOC110491996
XM_036951018.1 mRNA downstream 151448 56207828 ~ 56229077 (+) False LOC110492043
TU183214 other upstream 85245 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 1303630 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 1679102 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2010586 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 4208308 51816510 ~ 51824182 (+) False G156000
TU184425 other downstream 188664 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 991934 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 1871770 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 2159297 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 3889328 59945708 ~ 59953165 (+) True G166131

Expression Profile