RNA id: XM_036955700.1


Basic Information

Item Value
RNA id XM_036955700.1
length 4954
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110496319
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75939769 ~ 75982606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtTTCAGTCTTGCTAGTGAGGATAGCCCCGGGAGAATTCCTACACAAGAGAGATTGTTTGGAGGTGATGCGAGTGAGGATTCAGAAGCCTGGCGTTCCAGCTACACCCCACAGCCCTGGAGGCCAGAGGTGAGTTTGTGTTTGCGGTGAGCTCTGATGATAACTCTGAGTTCTGGCTGAGCCGGGATAACTCTCCACTCAACCTGCAGCTACTGGCCTGGATTGGCAAGACTGGCATGGAGTGGACTGCTCCTGGTGAGTTTGGGAAGTATGCCAGTCAGACATCCAGACCGGTTTGGCTGTCAGTTCAAAGGAGGTACTTCTTTGAGATAGTCCATAAACAGAACGACAGAGGAACAGACCACATAGAGGTGGCGTGGCAGCTGAACCAGGAGGGTCTAAGGTTTACAGTCATCAGCTCCAAGTACATATCCCTCTACAGcaatgagTCTGCTCTGAGGATGAGTGACATCACTCATGTACCCCAAACGGCTGCTAGTCACACCCGCTCGCCTAGCAACCAGCCCGACAACCAGCTGAGCAACCAGCCTGCAGCCGACATGCTGAGAGTCGACCCACGCGACACCCTATACCAGaTCCCTGCCTTAGACAGTAGGTTCCTACAAGGCGTGTTACCTGACTGCTCCTATAAACCCAGCTACATCATCAAAGGCTTCCCTCTGCTGCGATACCAAGGCCTGCAATTTGTCCACATGTCCTACATCTATCCCAACGACTACACGCGGCTCACACACATGGAGACAGACAACACCTGCTTCTACCACGACAGTCCCCTATACCTGGACAgGTATGGGTTTTCCAGGTACATGAGGCTGGATGAGCCAGAGGGGCAGGAGGGAGAGGGCCGGGCcagaggtagagTTGATGGCATCTTGAGGAGGAGAAAGgcggtcccagaggagaggttagaTGGCGAGGCTCCTCCAAATGTGGGAGGGGCTAGTAAGAAAGACCCCGCCCCTCCTGACTATGGAGACGACTATGACGATTACACTCAGAGACGACGACGTAAACTCTTCTCCCTGCCACAGGCCAACAGggcacctacacacacaaacatgtttgATACTCTCACGTATaataagaggaggaagaggagagaaacaaATGCAGCAGCTGTAGTAAAGCAACAAGCTGTAGTCCAGACCAGAGCAACAGAACAGGATGGGTTGGGGATCCCCCCTGGTCCTGGGTCACATACATCACTACAGACTACACCAGCAGAACAGCTGAGACTAGCAGAAAGACCAGCAGACAGACCAGCAGAACAACTCAGACCTGTGAAGtccagagcaggggaacagaaaCCAGGAGACAACGAAGTTATGGGACCAGTAGCCCGAAAACAAACCAGACGAAGAGAGAGACCAGCCGAACAGACCTCAGCCGGGTTAAAGATTTTACCTGCACCACAAAAACTAGACCAGAACCTGCCAGTAGAGGGAGACGGACCAGAAGTTCAGCTTCCCCAGCTGCAAGGGAGTCACCGGCGTGTTCAACAGCCTGGTCCGAGGGGTTGGGGTAGCGCAACACCCAATcccctgaagcacctcccacctCCCACTGTCTCTAATTGGTCCATCAGGGTCGGTCGAGGGCGGAGACTTGTTAACCGTACACTAGAGCTGTGGTCAGCGGTTACCAAACAGTCGACCACACGACTGCCTGAGGTTAAACCACCGCTAATTAAGTCGGACCACAAAGCAACTGTGACTAGGAAGAGAGTCCAGGTCCTAGAGACAGATGTCATCCTCCGAGCACAACCACAGATAAAGTCACGACCGCAACCTGACTATGACAACACACTCCACGGGGATCTGCCCCCTGGTGTGGTCAGAGGGATGGACCGTCTGGTTGAAGGGGTTGACAGAGGgggaggtggtgagagagagggggaggaggtgggtgTGAGTGAGTCTTTATGGGGTCTTGAGGGAGACTCTGAAGAGGTGGAGGGCTTGTCTTATGACTCCACCCCTCGACCAGTGTTTGACCCTGAGGTGAACTGGGCTCAGACATTCCAGGTGACCCCTTTAGACCTCCAAGCGATGCGCTCTGATTGGATAGACCTCCGCTGTAACGTGTCTGGTAACCTGCTGCTCCGCCCTAGAGACGCTCTGCCTGTCGTCAAGGCCTTCATGGACAAACTCAACCACAGACACcatgggcGTTTCAGCCTGCTGCGTGTGCTGAACGTTGAGAGGAGAGTGGATGGAGCTCAAGGCAGCAGGTACTTCCTGGAGCTGGAGCTGAGGGATGTGAATGGCCAACACCTTCGCCTGTCACACTACATCTATACTCTGATTCGCCACAGACTATCTCGCCCCCGGGGACTCCCGCCGCTTCGCCCTGCCCCTGAGATGTTGCTTTGCAACCCTGTTGGTTTTCACTGGAACCCTActgctactgtccacttcatCGTACCAgtAAAGAACCAGGCCCGCTGGGTGCAGCAGCTGATAGTTGACATGGAGGGTCTGTACCAGACCACTGGAGACCCCAACTTCAACCTCATCATCACCGACTACAACAGCACTGACATGGACATAGAGGCAGCACTAAAGGCATCCACCCTGCACAGGTACCAATACTTGAAGCTGAGTGGGAACTTTGAGCGTTCCGCTGGTCTACAGGCCGGCATCGACCTCATCACTAATGAGCACAGTATAGTGTTTCTGTGTGACCTCCACATCCACTTCCCCCCCTCCATCATCGACTCAGTCAGGAAACACTGTGTGGAGGGACACATGGCCTTCGCTCCTATCGTCATGAGACTGGACTGTGGGGCTACGCCTAGGGAGcccagaggttACTGGGAGGTGAATGGGTTTGGTCTGCTGGGGATCTATAAGTCTGACTTGGATGCTGCAGGAGGCATGAACACACATGACTTCACTGACCgctggggaggagaggactgggagctgctggacagGATTCTGCAGTCGGGTCTGGAGGTGGAGCGTATCTACATGAGGAACTTCCTACATCACTACCACTCTAAACGTGGCATGTGGAACAGACGCACCCAACGCAGCGGCACGTAAcccacaacaacacagccaaAACGTTCAGTGATGCAGCCGTACCCACGACGACTCATCCGTGGGTGCAAGGAAACTGCCACACTTTAACGTCCCCATTCCTCGTATCAGCCATTTACAGCTGTCGATCAGTTAATGAGAGGGCAGGACGATGGGGATTCCTGACACCATTGGGTGATATCCCTGTCACTCAAAAGGTTTGAGGGTGTGGTGATGATGGAACACAACATAGTACTGATTGTCCTGGAAAAAGACACTACTGAAAACTAGAGCAGAGGTACTCAAATCTGAATATGTAGATCCGCAGTACTGCTGGTTGACCAGAGAGTCACTCGTCCagtgtcccaggtctgaatcacaggttgatgtttattgtcatgattcttgccctggaggcagaactgagctgTTTCTGCAAGATGGGCCAGCTGCCAAGTCAAAATTGtttgggttagcagtgtggttcgGGTTGCAAAACAGATTTTATGACCACTGCTAAGCTGTTCCAGGGAAAGACTAATGACAATCAATAACAACCTGCGTCCGAATCAGTCCCCAGTCCCGAATCAGACCTCAACAACTGGAATTGAGAAAAGGTGGACAAAACACTACTGGGTACTCTATTTAAACATGATACTACTGGTTTACTCTATTTTAACAACACACTGCTGAGGATCCTGTTCTAAGGAGATACTGTTGTAGTAAAAATGTACACAGTGTGGATATTTTCCTTTGGCTAGACAAAGACAGATGTCTTTGGTAGAGTGAAGAGACTAATAAGAAAACTGGGAGCAGTGATGACCTGCTCTGGTCACTGGTACTGATGAACTAGTCTGGACAATCCTGGGCTGCCGAACCAAAGACAGAGAcgatacacacctacacacacacaattttaaaTGTCATGGATCATACAGCATTTGTATGTACTCAGGGTTCAGCTTATTTATTGACAATGACAAAATGCAACAATGTTACTGTATCACtgtgatttgtattttttttggtttaaaacattgttttattcatataattaattaagaCGTGAAAAGGGGGATCACTTCTGATTCAGGCAAGTTTACTGTACTGGATGGGGATATTTCCTTTAATATGCGATGTGCATTATGAAGCCTTCTGTATTCATAAGTGCCTGCTCCATAGCTCTGCTACTGTAGAGCTCTACTACATATTACTGACTCTTGGATGTCACATTGTGCCTATTGCATGTATCCTTCGGGAGCGCTGTCTATGTCATTTTCTATGGATTATACTTAAGAGGATCCCGCACCAAACCCCTTGTGCAAGTTaacaattttttttaatgttaCTCCGTGCCTTCTCTACAGCTCCGGCGAAGCTGGGGGTTCAGTTGACACAAAACTAAACTTTTGAAATGTGGAAATACTACCTGAACTTGTCAGTTAAAACCCCCATGTAGTCTTTTACATTAGATTTATAAATCATCACTGtatgtctaataaatcactgtttatttcatgaaaataactccaaatatatttttataattTATTTCCATGAGCCTCCTTTTGCCATTGAAATGCTTTGTCTCATCATTTTGGACGTGTTGATACAAATGTtaatatatttacatacacagccctAATTTCCCGAATTGGATCGTCTAAACTCTAGTCGAGAACCTACTCCACTTACCCCTTCAAAGTAGGAGGATGCAATGCAAATTATCGATGGCTGGTCATTGGTCAGAATAATCAGATTGATGTCATGATCTGGGCCAAAAAAAACACCCACCTGAACAGGCTTGAAATTCCAGGCAttttttttcaaacagctcttacacaaaaagGGCGTTATCAAAATGTTCACAATTTCAGTGTTATTTCGACCGCCgtgtgaaaataaaaaaaa

Function

GO: NA

KEGG:

id description
K09656 B4GALNT3; beta-1,4-N-acetylgalactosaminyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210097 lncRNA upstream 100755 75856129 ~ 75856857 (+) True G185211
TU210090 lncRNA upstream 112037 75843761 ~ 75845575 (+) False G185205
TU210091 lncRNA upstream 113545 75843761 ~ 75844067 (+) True G185205
TU210088 lncRNA upstream 114211 75842846 ~ 75843401 (+) True G185204
TU210089 lncRNA upstream 114413 75842626 ~ 75843199 (+) False G185204
TU210114 lncRNA downstream 1444 75984050 ~ 75984401 (+) True G185228
TU210222 lncRNA downstream 121517 76104123 ~ 76104424 (+) True G185326
TU210252 lncRNA downstream 167929 76150535 ~ 76150879 (+) True G185352
TU210272 lncRNA downstream 204969 76187575 ~ 76187870 (+) True G185367
TU210281 lncRNA downstream 220650 76203256 ~ 76204036 (+) True G185376
XM_021572140.2 mRNA upstream 21615 75915637 ~ 75935997 (+) True LOC110496313
XM_021572129.2 mRNA upstream 55570 75894189 ~ 75902042 (+) False LOC110496295
XM_021572122.2 mRNA upstream 55570 75894355 ~ 75902042 (+) False LOC110496295
XM_021572113.2 mRNA upstream 55570 75894357 ~ 75902042 (+) True LOC110496295
XM_036955641.1 mRNA upstream 126140 75829380 ~ 75831472 (+) True LOC118942030
XM_021572234.2 mRNA downstream 11276 75993882 ~ 76053143 (+) False c2cd5
XM_021572241.2 mRNA downstream 11276 75993882 ~ 76053143 (+) False c2cd5
XM_021572257.2 mRNA downstream 11276 75993882 ~ 76053143 (+) False c2cd5
XM_021572266.2 mRNA downstream 11276 75993882 ~ 76053143 (+) False c2cd5
XM_021572282.2 mRNA downstream 11276 75993882 ~ 76053143 (+) False c2cd5
TU209106 other upstream 870205 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 916522 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 1071112 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1243498 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1422586 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 185051 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 185051 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 451211 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 551772 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 847807 76830413 ~ 76832500 (+) True G185718

Expression Profile