RNA id: TU137405


Basic Information

Item Value
RNA id TU137405
length 952
RNA type TUCP
GC content 0.53
exon number 5
gene id G119160
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18670513 ~ 18672320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGAAAGTTGCAGTTCTAGCTATAATTCTGCAACTGACCTCATTTCATGTCTGCTTCTTCTGACATTAAAAAAGTGACTGATATTGTCACTCAGCCTAACATCCCACTGCTTCTCCCATCATACCGTGGCTTCTGTGGGTGACCACTGCAGGTCCTCCACGGACTTGGTGTGAGAACTGAAAGGCCGTTGGTCGATCTGCCAGGAGGTCCCTCCCTCCTGTGGTTCCCACACATGGATGTTATTTTTGCAGTCGCCACTGACCAGCCGACCGGGTACTTTGGGCGACCAATCAATGGCAAAGCCCTCACTCATGTGACCCGAGAAACTGAAGAGGGGCGTGGCTTCCTTCTGCTGTTTAACAAAGGTTGACATGGCAGCTGAACTGTGGACGGCTTCCACCTGGGATCGGAGGTCAAATATCTCCACCTGACCTTTCTCTGACCAGACAGCAGCCAATGACTGATCTCCACGATGGGTCACTCGGACTCTGTTGATCCCTCCGTAGTGAGGCATCATGGCCAACTCCATCTGTGGCTTCttatcttcatcatcatcctcttcaTCACTCTCTCCATCACTGCTCTCGTCCCCCTCCTTCACTTTCTCTGTAGTACTGTTGCTGAGGGCAGCGTCAGCCTGTGTGCCTGCACAGAGCAGCATAGAGAGGGGATACTGTTCCCTGCCGTCTCCATTCGCATCTCTCAACACGTCGAAGCTCAGGCAAGGAGCACCTGTCTGACACTCGTGGTACATGCGGTAAGCCGACCGGTCCATCTCGAGCTCCTCTCCGGGTTGGAGAGGCTGTTTTCCGGGGACATAAACTTGAGTTTCCTGTTCTCCATCCTTTCCCTCTTCTTCCATTTCGTCTTCGTCGCTGCCACCCCCTTCCATTtcttctatctctccatcttcGTTCGGAAGCGTGTCTTCTCCGGGCGCCGACATTTTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137404 lncRNA upstream 7402 18662619 ~ 18663111 (+) True G119159
TU137294 lncRNA upstream 77698 18592511 ~ 18592815 (+) True G119076
TU137289 lncRNA upstream 84434 18585876 ~ 18586079 (+) True G119071
TU137284 lncRNA upstream 90101 18580204 ~ 18580412 (+) True G119066
TU137283 lncRNA upstream 91414 18578720 ~ 18579099 (+) True G119065
TU137484 lncRNA downstream 68374 18740694 ~ 18743720 (+) False G119222
TU137488 lncRNA downstream 68374 18740694 ~ 18744243 (+) True G119222
TU137427 lncRNA downstream 121383 18793703 ~ 18797176 (+) True LOC118938256
TU137510 lncRNA downstream 149568 18821888 ~ 18822563 (+) True G119241
TU137528 lncRNA downstream 262353 18934673 ~ 18952185 (+) False G119245
XM_021622568.2 mRNA upstream 12719 18652960 ~ 18657794 (+) True cdc42ep5
XM_021622545.2 mRNA upstream 48933 18606081 ~ 18621580 (+) False LOC110536807
XM_036940638.1 mRNA downstream 35315 18707635 ~ 18720399 (+) False leng9
XM_036940631.1 mRNA downstream 36535 18708855 ~ 18720399 (+) True leng9
XM_036940656.1 mRNA downstream 49095 18721415 ~ 18755200 (+) False ttyh1
XM_036940667.1 mRNA downstream 49097 18721417 ~ 18752689 (+) False ttyh1
XM_036940662.1 mRNA downstream 49097 18721417 ~ 18754197 (+) False ttyh1
TU137398 other upstream 34472 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 193379 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 194159 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1212491 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 1248853 17410632 ~ 17421660 (+) False LOC110520798
TU137542 other downstream 286816 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 584266 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 834331 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 853874 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 853874 19526194 ~ 19528660 (+) True LOC110537095

Expression Profile