RNA id: TU137542


Basic Information

Item Value
RNA id TU137542
length 2111
RNA type TUCP
GC content 0.47
exon number 3
gene id G119245
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18934673 ~ 18992769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctgcaggtggtgaccacagaccacttctcagttcctatgcttcctggctgatgttttgatcacttttgaatgctggcggtgctttcactctagtggtagcatgagactgagtctacaacccacacaagtggctcaggtagtgcagctcatccaggatgggacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggctctaccaggagacaggccagtacatcaggagacatggaggaggcagtaggagggcaacaacccagcagcaggaacgctacctccgcctttgtgcatggaggagcaggaggagcactgccagagccctgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaatggtcagaaacagactccatgagggtggtatgagggcccgacgtccacaggtggggtctgtgcttacagcccaacaccgtgcaggacgtttggcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgacagcaggttcacactgagcacgtgacagaatctggagacgccgtggagaacgttctgctgcctgcaacatcctccagcatgaccggtttggcggtgggtcagtcatggtgtggggtggcatttctttggggggctgcacagccctccatgtgcttgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgtggttgggttcctcctaatgcaagacaatgctagacctcatgtggctgggaTGTGTCAGCAGtgcctgcaagaggaaggcattgatgcaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggagcatgcccaggcgttgtagggaggtcaaacaggcacgtggaggccacacacactactgagcctcattttgacttgttttaaggacattacatcaaagttggatcagcctgtagtgtggttttccacttttgagtgtgattccaaatccagacctccatgggttgataaatgtgATTTCCATTCAtgatttttgtgattttgttgttagcacattcaactatgtaaagaaaaaggtatttaataagaatatttcattcattcagatctaggatgtgttattttagtgttccctttatttttttgagcagtgtatattatataATAGCATAGTAGAGCAGTATTATATATAGTTTATATTACCATCACTAGAACACACCAGACATCCAGTCTTACCTCTCCTCCTTATCTCCTTCAGATGAAGGAACGATCCAGATCTACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCTTTTAAACGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCATAACCACCAGTAAGGTGGCAGTGAGGTGTAATGGTAAGATCCAGTGTGACGTCCCGGCGTCCAACTCTCTGTATGGAGATCCATGTGTTGGAACCTACAAGTACCTGGAAGTGGCGTACACCTGTGGCTAAATGAGATCTTCTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGATGGATTTGTATTTCTTTCCCGTCTTCTCTCCTCTGAAGTCTCAATTGAGTGTAAAATCTATGTAAATTCAAAATTGGTAAATCCCATTGATTGTGTATTTCATGAGGCATAACTTGTGTAATAAAATCATGAGGCCCCTCTTGTGCTGCAGCAATGCACGGTCAGGAGGAAGCATGGAGAAATTAAACATTAACCCCAAAAATAAACTATTCTTCAAATAACACTGACATAATACTTTGCATTTTGTGTACTAAAGTATTTCTTCAAAACAATGTTGATTTTCTGAACTGAGGTGGTTGGTCTGATTTTCACTAAGAACTGTGGTGGTTGGTCTGAATTAATCTAAGCAGCATAAAGACAAGACTTGGTCTTTTGTTCAATATTATGAAACATGTCCTTACACaataaatactttatttgaatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137528 lncRNA upstream 6951 18934673 ~ 18952185 (+) False G119245
TU137522 lncRNA upstream 6951 18936509 ~ 18952185 (+) False G119245
TU137529 lncRNA upstream 19889 18938110 ~ 18939247 (+) False G119245
TU137510 lncRNA upstream 136573 18821888 ~ 18822563 (+) True G119241
TU137427 lncRNA upstream 161960 18793703 ~ 18797176 (+) True LOC118938256
TU137540 lncRNA downstream 12311 18973776 ~ 18992769 (+) True G119245
TU137651 lncRNA downstream 91343 19052808 ~ 19057561 (+) True G119330
TU137635 lncRNA downstream 100631 19062096 ~ 19063167 (+) True G119317
TU137636 lncRNA downstream 115661 19077126 ~ 19078187 (+) True G119318
TU137697 lncRNA downstream 174097 19135562 ~ 19135783 (+) True G119367
XM_036940776.1 mRNA upstream 6984 18946478 ~ 18952152 (+) False LOC110508936
XM_036940769.1 mRNA upstream 6984 18946479 ~ 18952152 (+) True LOC110508936
XM_036940783.1 mRNA upstream 19733 18934210 ~ 18939403 (+) False LOC110514612
XM_036940790.1 mRNA upstream 19733 18934210 ~ 18939403 (+) True LOC110514612
XM_036940756.1 mRNA upstream 28579 18873484 ~ 18930557 (+) False si:dkeyp-69b9.3
XM_036990228.1 mRNA downstream 9744 18971209 ~ 18977511 (+) False stl2
XM_036990236.1 mRNA downstream 9745 18971210 ~ 18977511 (+) False stl2
NM_001124196.1 mRNA downstream 11789 18973254 ~ 18977376 (+) True stl2
XM_036940804.1 mRNA downstream 23330 18984795 ~ 18991367 (+) False LOC118938275
XM_036940795.1 mRNA downstream 23331 18984796 ~ 18991367 (+) False LOC118938275
TU137405 other upstream 286816 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 323095 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 482002 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 482782 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1501114 17455765 ~ 17458022 (+) True G117735
TU137673 other downstream 295121 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 545186 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 564729 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 564729 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 715270 19676735 ~ 19683059 (+) True LOC110537226

Expression Profile