RNA id: TU138227


Basic Information

Item Value
RNA id TU138227
length 1610
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G119795
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19504866 ~ 19506500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAGCCATTTTTTTATTCCATTATTTCACATTTTCCCACCCAAAAAGATTCAATTAAAATGACATGGTAAGATTTAAAAAGCAAATTTTAGAAAGGGAGGAACTCTAGGTCTGAACACAAAGCATCATGGGAACTCCCTCTCAACCCCAGTGTAACCAGTGGTCCTTGGAGTCGTAATGACAAAGGTTGAGGGAGATGAGGAAGAAGTGAGACCATATATACAGTTGAGGGGACAACCTTTTGATGAGTATGAACATTGTTGAACAGTCCAATAGAACACTTGAGAACCTGTCCAAAAGACTGCACTCCCCTTCAGTTAAAAAAAACATCTGTTTAACATCTCCATCTCACCCTTTGTGACAACAAACCCATTACTTAACAGAAGAGGTGTACAATCACACAATACTACCTGACTTCTATGGTTACTAAAAGCCTGATAACTTGGTCAAAGTAAATAGTGCATTTTATTTGTGGGCAGTAGAACAGGAAACAGTGGTATTAGTCTTTATACCTTTATTTTGTCTGCTGAGGTGAGAAGTTACACAAACACTACCAGGGCCAAAGAGATTTCTGTATGAGCAGTCCAATATTCTATAGGTAGGTTTGAAACAGGAAGCAAAACAAAAGAAATTCATTCCAGACAAAGCAATACAATAGTAACTTGAATATTGACTACAATCTCAAATCATTGTTACCTGAAAATACCAAAGCATGAAATGACTCCATGTATTGACAAACTTGCTAAGCACAGACATGAATGAGTACTCCACATATTTTACTCTCAAATGTGACATGAAAAATAACATGAAGGCTTTTAATCAGAACCAGATCGAGCCCTACTCAACACCAATCCAATATTTACCACTCACAATTCAAAAATAACAATTCAGAACTTCAAAAGTCTGCCTttcccctctcccagtctctcttaTGGGtaagggtagggtgtagggacaGAATTATTTTGCCTGCTAACAATGGCGATGGATAAATTCACACTAGATGAAAGGTTTCAAtccaaaaaataaacaaaacctTCAAAAGAGAGACAGGCAGTAATAAAAACGTATGGTACTCAAACTCCGGCCCTGGTGACAATGCAAGGTGTgacagtaaatatacagtattgGAACCACAACAGCTGACATTCAGATAAATTAGTCCAATATGACATTGGAGTTGGTTATGTGTAGTTACAGCTTCTCCCCCTCTCgctacacacacagggagaggggctTAGTCTGATGTACATGGAAGAAAAGAAACGAGGAAATCTAAAGGTCCAAATCTGAGAAGGAAAATCACAAAACGAGGCCATTCCTGTCAATAGCTTTCCATTCTATCCTGTCAATAGCTTTCCATTCTATCCTGTCAATAGCTTTCCTTCCCCCTTTTCACAACAAGAAACTGATCATGTTATCTACATTGGtgggtcaaataaaaaatgtcacCAACTCCCTCTCCCCATATGAAATGATGAATACTCctgtccatccatctatccaccaCTCTTATAGAGTAGACCAGTCCACTTCCCCTCTCTACACCTTCCTAAAGTACTTAAAACAGGCTCCCTCCATTTAAATACAAACCATAAGGTGTggcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138294 lncRNA upstream 10742 19492925 ~ 19494124 (+) False G119856
TU138296 lncRNA upstream 10742 19492925 ~ 19494124 (+) True G119856
TU138292 lncRNA upstream 12227 19492421 ~ 19492639 (+) True G119855
TU138281 lncRNA upstream 40950 19463328 ~ 19463916 (+) True G119844
TU138250 lncRNA upstream 95004 19407962 ~ 19409862 (+) True G119814
TU138313 lncRNA downstream 12441 19518941 ~ 19519677 (+) False G119866
TU138314 lncRNA downstream 12441 19518941 ~ 19519497 (+) True G119866
TU138335 lncRNA downstream 46215 19552715 ~ 19562850 (+) True G119883
TU138367 lncRNA downstream 74321 19580821 ~ 19582374 (+) True G119909
TU138379 lncRNA downstream 85042 19591542 ~ 19594212 (+) False G119916
XM_021622737.2 mRNA upstream 23483 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA upstream 23483 19444131 ~ 19481383 (+) True LOC110537022
XM_036940854.1 mRNA upstream 71235 19392737 ~ 19433631 (+) True LOC110534362
XM_036940852.1 mRNA upstream 157566 19307576 ~ 19347300 (+) True LOC110512786
XM_036961707.1 mRNA upstream 245792 19131905 ~ 19259074 (+) False LOC110503718
XM_021622866.2 mRNA downstream 19663 19526163 ~ 19527919 (+) False LOC110537095
XM_021622887.2 mRNA downstream 59379 19565879 ~ 19579511 (+) True LOC110537107
XM_021623004.2 mRNA downstream 91013 19597513 ~ 19599416 (+) True LOC110537165
XM_036941014.1 mRNA downstream 130934 19637434 ~ 19645326 (+) True LOC110537142
XM_036941028.1 mRNA downstream 170156 19676656 ~ 19683059 (+) False LOC110537226
TU137673 other upstream 247372 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 543401 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 832546 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 868825 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 1027732 18476424 ~ 18477134 (+) False LOC110536658
TU138223 other downstream 151 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 19694 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 19694 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 170235 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 195599 19702099 ~ 19703788 (+) True G119952

Expression Profile