RNA id: TU138802


Basic Information

Item Value
RNA id TU138802
length 350
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G120270
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20355631 ~ 20355980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACTGTCAGGGCCGTGGTGGCCTTCCCCTGTTTCCTCCCTTTATGCACTACACAGCTCCAGTTACCCATCATGCCTGCAGATGCCTTGCTCTCCAAAACACTCGCCTGGTTCTTTGAAAGGACGTAATCTGCACTCTCAGGGTAAACTCGCTTCTTGTTGAGCATCCAGCTCACTGTCGCCTCCTGTGGCCATGGAGTGACACTGCAAGTGATCGTCATTTTGTTGCCCTCCACTGGAGCAGGTGGGGAGATGGATACTGTGAAAGAAAGACATGGGTAAGTAAGAGCAATGAGATGTTAATCATATTCACAGGTTTATGATATGTGTGACTGTATGATAAACAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138801 lncRNA upstream 62 20355181 ~ 20355569 (+) True G120269
TU138800 lncRNA upstream 484 20354738 ~ 20355147 (+) True G120268
TU138795 lncRNA upstream 14341 20340974 ~ 20341290 (+) True G120263
TU138690 lncRNA upstream 29401 20325102 ~ 20326230 (+) True G120188
TU138786 lncRNA upstream 42866 20312400 ~ 20312765 (+) True G120254
TU138803 lncRNA downstream 148 20356128 ~ 20356341 (+) True G120271
TU138804 lncRNA downstream 771 20356751 ~ 20357142 (+) True G120272
TU138672 lncRNA downstream 6246 20362226 ~ 20362841 (+) False LOC110509663
TU138665 lncRNA downstream 7133 20363113 ~ 20364193 (+) True LOC110509663
TU138807 lncRNA downstream 22858 20378838 ~ 20391636 (+) False G120275
XM_036941266.1 mRNA upstream 1785 20338252 ~ 20353846 (+) True plekhg6
XM_021590448.2 mRNA upstream 17958 20326378 ~ 20337673 (+) True LOC110509528
XM_021590486.2 mRNA upstream 44856 20298486 ~ 20310775 (+) False LOC110509548
XM_036941253.1 mRNA upstream 44856 20298486 ~ 20310775 (+) True LOC110509548
XM_036941247.1 mRNA upstream 58493 20259815 ~ 20297138 (+) True LOC110537377
XM_036941283.1 mRNA downstream 6437 20362417 ~ 20364212 (+) False LOC110509663
XM_021590660.2 mRNA downstream 8592 20364572 ~ 20372023 (+) True LOC110509646
XM_036941347.1 mRNA downstream 96802 20452782 ~ 20462007 (+) True LOC110509563
NM_001281340.1 mRNA downstream 229329 20585309 ~ 20595848 (+) False wnt4b
XM_021623469.2 mRNA downstream 252571 20608551 ~ 20612480 (+) False LOC110537428
TU138791 other upstream 35375 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 171006 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 184250 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 198521 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 330648 20018699 ~ 20024983 (+) False casp2
TU138671 other downstream 51882 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 544294 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 618871 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 635774 20991754 ~ 21015891 (+) True LOC110509768
TU140444 other downstream 1186117 21542097 ~ 21547034 (+) True LOC118938333

Expression Profile