RNA id: TU153668


Basic Information

Item Value
RNA id TU153668
length 2089
lncRNA type read_through
GC content 0.47
exon number 2
gene id G133432
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33102930 ~ 33135626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacacataaatcacccatgtcacaccctggcctaaccaaaataataaagaaaacatagAATACTAaagccagggcgtgacacaacaAGAAATCTCTTAACCCCTCTTTTCCTCACACATCCCATAGACACATTAAGAGAGGGTGCATGGAAGACAGGAGGATGATTAAAAAAGGTCTATTTCCAACTGCACTGTATATTACAGACTGCACTCAATCAATTTTGACAGGCTTGATTGACGATAGTGTAGCACTGAGGCTAAAGCCCTGGCAGAACCATATAGCTACTCCACCGGCCAAGAAATGATGGCCGTTTCCACCGCTCTCCACCTCCAACACCGATAATGTGTGATTCCATCATGCTGATCCAAGCACTTTGGAGCTCGTCTTCAAGATATTAAAAGGTTATTCATGGACTATCAAACCAAAGCAGTGGTCAAGAAATGCTGTAGGGGCCCCGGTGAGTGCAGGTGCACTAGCTTGCTTTAATGGCAATAGACGTCAACATGTTTACACAAGACAGgcaagacacacatacacagtatacATCCAATAACAGCTAATGTGTTGCCGTTTATTGTCACAAAGCACAATGACATATTTAGAATTTGGATGTTGTTTTTATTATGACTGAATTAGTAGGAATTAGAAAGATTTGTCAATTAAACATCACTTCACATACATGCTGTAACAACTGGCGTAAGTAATCTGTTCACAAATAGGCACAGCTCGGGAGGTAATACCATTAAAGTTCTGCTACTGCAGCATGCCTGCTATGGGTTCAGAAGCAAGGGGTTTGAGTGTGTTGTGAAGACAAAGCACAGTAGAGAACACTGCCAAGTTGTTTTCACGGATGGCAAAATAGCTTCCATGCTCTCTTTCATTGTAATGTAGGTCAGCCTGTGTCGTAGAGAGACAAAATGAGAGCACAGCTCAGCAGTTGCAATCTCAGCAAAATGATCTCTGTGGAATTGTGGGCAGCAAGGTTATTCCTATTGGCAGTAGGGTAAGATGCATTGAGTTAAGCTATTTAACTACTAGAGAGTATTGAGTAAAATGTGGTCATAAGTTATGGTAGGGGTTCGTCACTTATAATAAAATGCATATACAGTTCATTAAGTACTCTGCGAACACTGGACTATTGTAACACTGCCTCCAATTAGCAAAAGATTCAGATTTCTATACAGTGAATCTAATTGCCACCAAAGCTACTTGCTATACACAGTGCATAGTATTATGTAATGGCTAAGACAAACTGCATGGCGTATTCACAAAACCTCATCACCATTTACCATAATTTCCCACACATCCTCTTTGAGTCGGTCAATTCAGAATTTAGAATAACCCTTCAGGTTGATTACATAATGGTCCCTATTTGTCTGACTTGTTGCACCTCTATCAGCATCACTCCGAGTGTATGCACAGCGCCACGTTCTTGTGCCTCTCCCAGTAGTGGCAGTCCTCAGGGAAGCTCCAGGTGGCCTCACTCTCCTTATGGTGACTGACAGCATGCACCACAAACCCTGCAAGCTGCTTCTCTAGGACCCCCACCACGGCCTGGGCATCACCCTTCTTCCCCGGCCCCTCCATCAGTTGCCGGATGCAGTCGCGGGGCACTGGTTGGGGACTGGTGCTGTAGGAAACCACCAGGTTGGTATCGTTCACCTGCAGCACCTCAAACCAGTTCTGACCGGCCATGTGTTGGAAGTGGTCCCCGGCACGCCAGTTCCGATAGCTGCTGCCAGAGTGGTTGACCACTCGGACCGACCAGCTCACCCAGTCGTACTTCCTGGTGAGAAATTCCTGTACTTCCTGAGCCGTGTCCTGAAGATTCCGTTCCTCTTTTTCCTGGAGAAGACGCTGGGCGTCAAGGCAGGCCTGATCAGGGAAGGCTGCTACGCAGGCCTCAATGCATGCCTTCATCTTTAATTCCACTCTCTCGATTTCTCTGCTCCAGACCTGGATGGTTTCTTGCTCCTCATCGGGGCCCTTGGTGAGGGCACAGTGGCCCAGCAGGGCAATCAGGCCCAGGCAGAAGAGCTCCTTCATCCTCACACAGAAGTCCTCCAGTAGGCGCCTGTTCCTCGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153647 lncRNA upstream 19355 33083348 ~ 33083575 (+) True G133417
TU153645 lncRNA upstream 20948 33081687 ~ 33081982 (+) True G133415
TU153494 lncRNA upstream 90021 33011062 ~ 33012909 (+) True G133272
TU153489 lncRNA upstream 100922 32996591 ~ 33002008 (+) True LOC110487479
TU153499 lncRNA upstream 106434 32995620 ~ 32996496 (+) False LOC110487479
TU153663 lncRNA downstream 2525 33138151 ~ 33160024 (+) True LOC110487588
TU153676 lncRNA downstream 8748 33144374 ~ 33173378 (+) False G133439
TU153679 lncRNA downstream 8748 33144374 ~ 33173378 (+) False G133439
TU153680 lncRNA downstream 8748 33144374 ~ 33173378 (+) True G133439
TU153766 lncRNA downstream 109371 33244997 ~ 33245280 (+) True G133520
XM_021559477.2 mRNA upstream 53642 33045832 ~ 33049288 (+) True tmem176l.1
XM_021559454.2 mRNA upstream 57209 33043242 ~ 33045721 (+) False LOC110487536
XR_005036445.1 mRNA downstream 2421 33138047 ~ 33160062 (+) False LOC110487588
XR_005036447.1 mRNA downstream 2421 33138047 ~ 33160062 (+) False LOC110487588
XM_021559571.2 mRNA downstream 180664 33316290 ~ 33321834 (+) True LOC110487649
XM_021559607.2 mRNA downstream 271183 33406809 ~ 33408519 (+) True LOC110487688
XM_021559622.2 mRNA downstream 299072 33434698 ~ 33460997 (+) False ntrk1
TU152486 other upstream 1215358 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1219857 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1736608 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1739717 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1809896 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 31812 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 360828 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 678407 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 826791 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 1552329 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile