RNA id: TU159831


Basic Information

Item Value
RNA id TU159831
length 200
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G138991
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37692982 ~ 37693181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagatgtgtttgttacttgaactctgaagcatttatttgggatgcaatttctgagcatggtaaactctaatgaacttatcctctgcagtagaggttactctgggtcttcctttcctgtgcggtcctcatgagagccagtttcatcatatcgcttgatggtttttaccaaatagggctatcttctgtatatcacttctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159626 lncRNA upstream 102425 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 160869 37531419 ~ 37532113 (+) True G138640
TU159444 lncRNA upstream 174128 37518494 ~ 37518854 (+) True G138631
TU159443 lncRNA upstream 180237 37512539 ~ 37512745 (+) True G138630
TU159435 lncRNA upstream 194023 37498618 ~ 37498959 (+) True G138622
TU159908 lncRNA downstream 79809 37772990 ~ 37773504 (+) True G139038
TU159910 lncRNA downstream 83410 37776591 ~ 37776949 (+) True G139040
TU159990 lncRNA downstream 251721 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 252163 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 309885 38003066 ~ 38007585 (+) True G139139
XM_021561532.2 mRNA upstream 28689 37628152 ~ 37664293 (+) True LOC110489000
XM_021561519.2 mRNA upstream 71107 37607093 ~ 37621875 (+) True LOC110488991
XM_021561508.2 mRNA upstream 89688 37572404 ~ 37603294 (+) True gnl2
XM_021561486.2 mRNA upstream 296320 37347656 ~ 37396662 (+) False LOC110488976
XM_021561494.2 mRNA upstream 296320 37379538 ~ 37396662 (+) True LOC110488976
XM_036947634.1 mRNA downstream 6034 37699215 ~ 37763715 (+) False LOC110501519
XM_036947642.1 mRNA downstream 6034 37699215 ~ 37763715 (+) False LOC110501519
XM_036947647.1 mRNA downstream 6034 37699215 ~ 37763715 (+) False LOC110501519
XM_036947657.1 mRNA downstream 6034 37699215 ~ 37763715 (+) False LOC110501519
XM_036947663.1 mRNA downstream 6034 37699215 ~ 37763715 (+) False LOC110501519
TU158176 other upstream 1291011 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 1307126 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 1592705 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 1655241 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1836582 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 83880 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 83880 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 83880 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 83880 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 83880 37777061 ~ 37824010 (+) True G139004

Expression Profile