RNA id: TU160778


Basic Information

Item Value
RNA id TU160778
length 3819
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G139826
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38379248 ~ 38383209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTACAATTGAATTATTCACAGTGTTAAAAAGAAAATAACGCAATAGCCtctctatgattttgtatttcccCATGTTTTACTTGGTTATTCTAATAATGGTATTCTCTTAACACATACAGTTATTAGGTAAACAGAAAATGTTCCAAAACGTTACAAAAAACTATATTCATAGAAATTCTGCATGTCCACAAAGAAAACCCCGGTCGGCACCAACATATCAATCCTATTGTTTGAGAGGTTTCTTGTCAAATGATAGAAGTAGACAATTCAGCTCAACTCAaaacaaaacataaataaataccTAGCGCTGTGACTGTTTTGATTGCTTAATAAAGTGCAACTCATTCTAACTCATAGCAAATACTGCAcatgttatttttttctttatttttatctTGGATTTCATAAAATTTTGAAAAATAACTGGATTCACATTTTGCTTTAAAAAAGACAGTATGCTTCATAATTGGGATTGATTGAATTAACTGAACTCAAATCTTGGTAGTAAATGTAAATAGTTTTATTAATGGATCACTGACATCCATTTTCACCACAATTATTTCAGAGAGTATATGGATTAACATAAAAAGCACTAAAGTAACTTCTGTTTGCAGTCAAAGGAGAATTCAACTGGAAGCCAGTCTAACGTGTAGTGTAACAACCAGTCTTTGCCCAACTGCATCATGGGTTtcaaaagagaagaaaagagccAGCTAGATCATACAAAATCTATTCTAAAGAAGTTTCCTCTACAGTTTTGGGGAATTCAATATTACAACGTCACATACACCTCATATCAATATATTAGGTGCGATAAAATAAGATTTACATATAATATTCTACTCTTGATGATCATAAtccaatataatatattataatcCATTCCAATCGAATAAATTAATATGGAGGATGGGGAAGTGGGAGTGGGGTACAGGTTAAAGTGGCTTATGAAACCTAATTTAAATTAAGAAATTGTGTTTGGCTGAGAGCAAAAATGTATGCATTTACCTGTAAAAatttagcaaaatacattttctCCTGTTCATCTTATCTACATATACTCTACTTTCCAGAAGGGAGTTGATTAACATTTATACAATGAGTTTCTACCAAACCAATCATAAGTCACACAGATTTAAGTTCCCTTGAATCTTTACATGGTTAATGTTGAGAAAAAGGAACCCATGATAGTTTGTCTTTTTTATCAATATTGTAAACCTCACAGAGGTATGCTGTCTCTTCAGCTCCCTATTCCGGCAGCTCACATATAGACTCCTAGCATCCTACAGCTCAATACTCATTGCAGATATACAGTTTATAGGCATTCCAGACAACATAAACCCAGAAAACCCAAACTTCAGATCTTCCATCTGTTTGTTCATCTCATCATCTGAGCATGATATTGATTCATGATAATGATTCATTTAATGATATCTATCTCTAGTGTACAGAATGAAAATCAAATGCAAAAATCAAAAGGGTCTCATCAGCCGCTCAGAGCTAGCCTATCTCATTTCCGTAATGGTAGCGTAGCGTTCGGTAACGCTGCCACAAAGCTTTAATATCGGCCCTGCAATATGAATAAGCAAAATAATGTGCGTGTCCCGGGGACATTCACTGTTGCCGTGGCCACAAAGTAAACACACGCAGAAGGAATAGTATGTAGTACCATTGAAAATGATGACAGCATTTGTTTCTTACTCATAAGGTCCCTTGTCCAATGTCCTCCGCCCAACACAATACAAAACCTAGTCATTTACAATCACCTGCAATTGCAGAACCAAAAACCAAACAGCTTAAAACAGTGACTATGCAGCCTGTACATCTGTACTGTGCTCTCTGCATTTCTTTCATGTCACTGATATTACTAGATTAGAGTATCTGTTTAGCAGTCAGAAGGTAATTCATTGCAAGCAGCAAGAGCAATTCAATGGACGCTGTGCAATTATAACATGGCTATTTCTGAGGGGCCTTATTGTAGAGACACTTTCACAAAATGGAAACAGATGGCTGATTGCCCTCTGAAAATGTTATATTgccattgtttgtttttttaacaacACAAAGCCAATGCAGACACATTTCTCTGAAATATTTATTAAGTGGACATTGGCAGATATAACCAACTAGAGATAACCAATTAGccaagctagctaactagctgactataaccctaaccataacccttcaaACATGAACGGTATGATTGGGTTTAACATAACCATGTTGTGCTTTTATGAGGAAATAAATTCAGTTTATACCCCTAAATCGTACAGTTGTTCAACATGTACATATCAAAAAAGTAATGAGACCAGGTAGTTATTTTAGAGGACAATATAGACTAGTGGTGCAACAAGTAAAAGGGGGTTCATGTCCATTTATCATTGGTAGCCGAATTAGAGTAAACTTGAAGTGTTATTGTACTTGCATTTTGGTACATGAATACGTTGAAGCAAATCACTCCTCATTCATTATGCCAAGAGTATTGTATATTTGTTTGTTTGATTAATaaaatgccccccccccaaaagttaTTATATCTGATAGGAACACATTACCCTGTGTTGTAAAGAGGAAAAAGGCCATGGATATTACTCTCTAACATATCTTAATGTCCACAAAACATATGTCTACAAATAATGTGGTGAAGCACAAACATATAGGGCCCTACATTGTGTCACAATAACAAAATGGCACAATATGTGGAAACGTAATTTATTACCAATATATCAAGGTCTCCCCATTAAAACCTCAGGATAGCTTCAGTGATGTCAACTCTCTCTCGTTGAACAGTCATTTTTCGTCAATTAAAGATCTGCAAACCAAGTTCACTGAGTGACTAATGCTCTCTCTTACTGTGGGATTTGCTCACTGTTGGGATTCCATTGCTGTCATCTGCATGTACTAAGGACGTGTTTCTTCTAGTGGAATTATAGAAGTCCGGTGGTCCAAGCCAGGCGTTTAAAAACGCCTCCCACAAAATAGACGGTGACTCAAAGAGAGCAAATCAAAGACTCAATGTTATGTCTGTACAAGGTTTGAGGTAACATAATTTTCTGCTGCCAAAGGACCTACAGACAAGATAAAAAAGAATCAGTCAGAACTTTGACTTTGAATGATCGTGATGTGCTATGTGTGACATAATTGATCTCCCATCAAAACCTAATTTCCCATGTCTGTCTGTAGTTCTTTTATTGCCATGCTCAATGAAGCCAACTCTGTCTTTATGCCATATGTCCAATAAAAAGGTTGAATCATTGTTGTCAAGCAAGGATTCCTTGGTGAGTGTATTTTTGTGTTACGTACGTAAACATCGGACTTGAATACAGATTatttggagatgttgtttcctttTCCAGGAAcggttcttctcctcctccatctcactctctctctttttctgtctcttttGGAATACATGGGTGAACGCTGTCATACCTGTGTCGCCGATGCTGCCATTTTGATGGTACCATGTTGAGTTAGTGTTCCATGTTTCGTTAGTGTCCCTATGCCGCTGTGGTTGATGGTGAATCTGGTAATCCCCTCGATTCCATTGTCCCAGGTTTCGGGACCAATCACGCCCTCCACATTGCCCAGGAGGCTCTTTCTCTGGGAGGCGCAAACCGTCACGGGAACACGGGGGTCATCCCAGTGTTGCAGCTCAAGTTGTCCTTTCCCGGGAGTCGTCGGTCGTTGAACGTGTGCATGTTGATCACTGCATCCGTCTTGACCATGACCGGGACCTGGTGGTGGTGTTTGTGTTTCACACGCCTCCCGCAGGTGAACGACTGTCTGATCTCGTCCACCATGGCACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160737 lncRNA upstream 30470 38348472 ~ 38348778 (+) True G139785
TU160701 lncRNA upstream 52488 38326389 ~ 38326760 (+) True G139751
TU160700 lncRNA upstream 52936 38325962 ~ 38326312 (+) True G139750
TU160690 lncRNA upstream 63220 38315811 ~ 38316028 (+) True G139741
TU160687 lncRNA upstream 65499 38313474 ~ 38313749 (+) True G139738
TU161149 lncRNA downstream 246722 38629931 ~ 38630226 (+) True G140175
TU161166 lncRNA downstream 256104 38639313 ~ 38639796 (+) True G140192
TU161170 lncRNA downstream 259173 38642382 ~ 38642697 (+) True G140196
TU161172 lncRNA downstream 260634 38643843 ~ 38644077 (+) True G140198
TU161179 lncRNA downstream 268749 38651958 ~ 38652203 (+) True G140205
XM_021561628.2 mRNA upstream 467918 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 467918 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 488738 37863203 ~ 37890510 (+) False LOC110489035
XM_021561732.2 mRNA downstream 335083 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 338062 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 338062 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 374024 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 406327 38789536 ~ 38823441 (+) False LOC110489163
TU160072 other upstream 327504 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 435236 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 438534 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 457178 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 3156086 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3585165 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3585165 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 4127121 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 5347663 43730872 ~ 43731218 (+) True G146054

Expression Profile