RNA id: TU162368



Basic Information


Item Value
RNA id TU162368
length 282
lncRNA type intronic
GC content 0.44
exon number 1
gene id G141260
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39742422 ~ 39742703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTTTTGCATTTATTCCGTAAAAAGTTTTCCCTCCGCTCGATAAGGTGCAGGCTGAAATGGGAGGGGTATCGCCGTCAGTGGTATTCGATTGGATTTGATTGAGTGTGATTTTGAACGTCCCTCATTTCTCGGAGTTGACGGGTTGTTTCCTTCCCCTGAGCCTGTGGTAAACATTGTAATGAACGTGGATCTCCCACTCGGTCTCTGCCATGCTAGGGCCCAGGTTAAGTGCAGTTGCAGGCTATTATACATCATTAGGGTAAGTAAGACTCAGCCACGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162354 lncRNA upstream 13425 39728760 ~ 39728997 (+) True G141248
TU162351 lncRNA upstream 16994 39725163 ~ 39725428 (+) True G141245
TU162331 lncRNA upstream 42900 39696361 ~ 39699522 (+) True G141226
TU162241 lncRNA upstream 179685 39562435 ~ 39562737 (+) True G141148
TU162239 lncRNA upstream 181228 39560879 ~ 39561194 (+) True G141146
TU162369 lncRNA downstream 185 39742888 ~ 39743107 (+) True G141261
TU162370 lncRNA downstream 605 39743308 ~ 39743592 (+) True G141262
TU162375 lncRNA downstream 14870 39757573 ~ 39757889 (+) True G141267
TU162378 lncRNA downstream 18335 39761038 ~ 39761262 (+) True G141270
TU162245 lncRNA downstream 22112 39764815 ~ 39765313 (+) False znf407
XM_021562327.2 mRNA upstream 195059 39540706 ~ 39547363 (+) True LOC110489590
XM_021562317.2 mRNA upstream 211564 39527602 ~ 39530858 (+) True LOC110489581
XM_021562306.2 mRNA upstream 217491 39521563 ~ 39524931 (+) True LOC110489572
XM_021562272.2 mRNA upstream 221800 39503436 ~ 39520622 (+) False LOC110489537
XM_021562345.2 mRNA downstream 79177 39821880 ~ 39862520 (+) True LOC110489609
XR_005036684.1 mRNA downstream 373255 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 373255 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 373729 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 374062 40116765 ~ 40225332 (+) False LOC110489640
TU160072 other upstream 1690678 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1798410 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1801708 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1820352 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1796592 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2225671 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2225671 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2767627 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3988169 43730872 ~ 43731218 (+) True G146054

Expression Profile