RNA id: TU170868


Basic Information

Item Value
RNA id TU170868
length 377
lncRNA type intronic
GC content 0.38
exon number 1
gene id G149025
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46401592 ~ 46401968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgtaacatggtgaagccccaaaattgccctccctggaagcctgtgtttcagacataaggaagtgaattgtggcaaatgttctacttttaaactcggacaaaacagagatgcttgttctatcTAGTTCTTaaaaaacaaagagatcttctgttgaatctgacaattaatcttgatggttgtacagtcgtcgcaaataaaactgtgaaggacctcggcgttactctggaccctgatcactcttttgacgaacatatcaagactgtttcaatgacagcttttttccatctacgtaacatttaaaaaatcagaaactttctggcCAAAAATTttgaaaaattaatccatgcttttgttacttctaggttagacgtctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170864 lncRNA upstream 8685 46392603 ~ 46392907 (+) True G149021
TU170859 lncRNA upstream 15393 46386000 ~ 46386199 (+) True G149016
TU170808 lncRNA upstream 63719 46322656 ~ 46337873 (+) False G148968
TU170809 lncRNA upstream 63719 46322656 ~ 46337873 (+) False G148968
TU170807 lncRNA upstream 63719 46335468 ~ 46337873 (+) True G148968
TU170870 lncRNA downstream 1334 46403302 ~ 46403515 (+) True G149027
TU170873 lncRNA downstream 4512 46406480 ~ 46406706 (+) True G149030
TU170878 lncRNA downstream 8907 46410875 ~ 46411078 (+) True G149035
TU170884 lncRNA downstream 11903 46413871 ~ 46414142 (+) True G149041
TU170889 lncRNA downstream 18790 46420758 ~ 46421000 (+) True G149046
XM_036949734.1 mRNA upstream 269478 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 645609 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 932747 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1145749 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1145749 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 564168 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 579718 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 732247 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 732877 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 732877 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 909213 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 928963 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 1530092 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 1972199 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2404527 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 579751 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 1095980 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 2154814 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3696448 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4763447 51165415 ~ 51167174 (+) True G154859

Expression Profile