RNA id: TU173436


Basic Information

Item Value
RNA id TU173436
length 230
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G151449
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47831711 ~ 47831940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagggatagtgccaggtttcctccagacgtaatgcttggcattcaggccaaagagttcaatattggtttcatcagaccaaagaatcttgtttctcatggttagagtctttaggtgccttttggcaaactccaagcgggctgtcatgtgcctttttgtaATCTGGTGCGTGCTgatggcagggaagtcaggagcaggagaacaaacttggtataaacggagtaTTTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173411 lncRNA upstream 9203 47821237 ~ 47822508 (+) False G151438
TU173416 lncRNA upstream 9203 47821237 ~ 47822508 (+) True G151438
TU173412 lncRNA upstream 9447 47821237 ~ 47822264 (+) False G151438
TU173402 lncRNA upstream 16826 47814409 ~ 47814885 (+) True G151431
TU173390 lncRNA upstream 24987 47806522 ~ 47806724 (+) True G151419
TU173446 lncRNA downstream 9734 47841674 ~ 47842148 (+) True G151459
TU173451 lncRNA downstream 11816 47843756 ~ 47843968 (+) True G151464
TU173460 lncRNA downstream 22761 47854701 ~ 47855031 (+) True G151473
TU173476 lncRNA downstream 28350 47860290 ~ 47860946 (+) True G151481
TU173477 lncRNA downstream 28415 47860355 ~ 47860645 (+) True G151482
NM_001124697.1 mRNA upstream 458012 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 626270 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 195469 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 195522 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 195522 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 195522 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 195524 48027464 ~ 48133974 (+) False osbpl5
TU172952 other upstream 284132 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 846485 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2339332 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2359082 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2960211 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 724842 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2266476 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3333475 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3489856 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3580326 51412266 ~ 51417118 (+) True rl28

Expression Profile