RNA id: TU174242


Basic Information

Item Value
RNA id TU174242
length 1647
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G152182
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48656193 ~ 48657929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTACATGTTCACATTTATTCAAACTGTAGAAAATGGCTTTAACAGCCCTCTCAGACCAACCGCACAGGCAGAGACTGAGACAGAAGGGATCTGCTGCCCTCTTGTGGCTAAGAGTGGGAGTTCACTTACCCGACACGCCATAggcctttttacattttttacctacctatttaactaggcaagtcaaacaGATTCGAGTCTCAGAAACACGACCCTAGGAAGCACAGTGACCAAATTTACATGGGCACAGTATTCCGGATAGTAGCTCATATCCCGCTAAAGGTCTTATTCTGGAATTAATAAACGGAATATTCCTCATTTAAGTTATAGGTTAAATGGAATTGTAACAGAAACAGACTTACAGTAGggcctataacctctcacatgcAGTGTCATATAATACTATCACTAGCAGTAAAATTATACAACAAATGTCTTGGGAACAAGAATGAAGAATATtaatattatacttttttttattaatCTCTCGGGTCCAGTACGGAGAATCAGCTAAATGAATGACTGAATTATTTTGGTCGTACGAACTGTGCAGGTAGCCTACCTTTTGGAAGAGATTTCTTTGACAAATCAAATGAAAATATATCACACAACACCCATGATTTGTAAGATTGAGCCTGCGCACTGCACGAAAAACAACAGGAGAttggtgtgcatgtaaatgtggtCAATGACTAAGTTCTGGTTTCAATGACACTCTTTTGGCATAGGGGAACCACATCACTGCTTATGCCACTACTTTATCCActtgaataaaatacaaaatagattTTGGCTGCAACCTTTGCGTCACAAGGTTTTGGCATGTCTGCCTCGTGATTTGTTGGGAGAGTCACCAGATCTCCCCCCATATCAACGTAGGCAATGACATAGTTCCTCTAAGCCAAAAGAGCGCATCATTGAAACCAGACTCTAGTCTCTGTTGCTTGGGGGTCGGGTTTTGGAGAATAAGCAGGTTTGGGGATCAATCTCATTTCAGTGCCGTCAGCTTGAAAAGTAAACATAGAAAACAATGAGCAATTATCAAGCCAATACTTTAAAtttcaatcatcatcatcatcagagttTCCTGAATTGAAATAGAATTGGCCCAAAATCCTGATCCTTCGCAACGGGCACGGTAGACTGAATTCCCAGGCCCACgtctaaaataataataattaaaaaaaaaaaaatcttagtgTCATCTTCAAGACACTCCAACATAACATAGTACAAGAAAACAGGTACAGACTTAGGGATACTTCAGCtaaacatttttttgttgtaCTTTGTACAGGCAGCCTGCACATTCAAAGGGGGCAAAATGTTCTGAAACCAATTTAaaaacacacacacacaataccccataatgacaaagtgaaaacaggtttttagaaaattttgcaaatgtattacaaataaaaaaaactaaataccttatttacataaatattcagaccctttgcaacgagacacaaaattgagctcagctgaatcctgtttccattgatcaaattcaattgattggacatgatttgggaaggcacacacctgtttatataaaggtcccacagttgacagcgcatgtcagagcaaaaaccaagccatgaggtcgaaggaattgtccgtagagctccgagacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174298 lncRNA upstream 562 48655291 ~ 48655631 (+) True G152235
TU174268 lncRNA upstream 40064 48615810 ~ 48616129 (+) True G152207
TU174253 lncRNA upstream 59489 48596002 ~ 48596704 (+) True G152192
TU174251 lncRNA upstream 64104 48591856 ~ 48592089 (+) True G152190
TU174250 lncRNA upstream 65502 48590381 ~ 48590691 (+) True G152189
TU174244 lncRNA downstream 1289 48659218 ~ 48660922 (+) True G152183
TU174275 lncRNA downstream 41268 48699197 ~ 48705189 (+) True G152213
TU174682 lncRNA downstream 132281 48790210 ~ 48790509 (+) True G152589
TU174683 lncRNA downstream 132631 48790560 ~ 48791014 (+) True G152590
TU174684 lncRNA downstream 133547 48791476 ~ 48791675 (+) True G152591
XM_021564236.2 mRNA upstream 154313 48481528 ~ 48501880 (+) True prr5l
XM_021564195.2 mRNA upstream 208406 48394983 ~ 48447787 (+) True fcsk
XR_005036978.1 mRNA upstream 239135 48412707 ~ 48417058 (+) True LOC118940424
XM_036949793.1 mRNA upstream 522219 48066992 ~ 48133974 (+) False osbpl5
XM_021564280.2 mRNA downstream 78590 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564368.2 mRNA downstream 1091184 49749113 ~ 49767125 (+) True LOC110490948
XM_036949980.1 mRNA downstream 1410280 50068209 ~ 50093310 (+) True LOC110491010
XM_021564376.2 mRNA downstream 1440458 50098387 ~ 50100624 (+) False LOC110491026
XM_021564382.2 mRNA downstream 1492532 50150461 ~ 50159171 (+) True LOC110491039
TU174225 other upstream 98507 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 1108614 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 1670967 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 3163814 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 3183564 45472082 ~ 45472629 (+) False G148191
TU176287 other downstream 1440487 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 2507486 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 2663867 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 2754337 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 2762918 51420847 ~ 51421122 (+) True G155541

Expression Profile