RNA id: TU177155



Basic Information


Item Value
RNA id TU177155
length 1043
RNA type TUCP
GC content 0.37
exon number 2
gene id G154859
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51165415 ~ 51167174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCTCCTGCTTCCAAGGAGAGGTCACAAGATGAATACAGATTGAGTAGCAATGTGTATTTCTTTGAAGATGCAAAGAGGAAAAAGaatcatccaccacaacaggaccaagcggcgtggtgacaggcagcggcagcaggagcagcgcaaggaggaatggacatgggaggacgagttggacggtaaaggaccctgggcaaaaccaggagaatatcgccgccccaaggaagagcTGGAAGCAGCGAAGggggagaggcgctggtatgaggaggcagcagggcggcgcggatggaagcccgagagtcagccccaaaaatgtattgggggaggcacacaggaagggtggcgaagccaggtaggagacctgtgccaacttcctgtgcttaccggagggcgagagagaccgggcaggcaccgtgttatgctgtggagcgcacggtgtccccagtgcgggtgcatagcccggtgcggtacatatcagctcctcgtatcggccgagCTAGAGTGGGTGCCATGATGGTGGGTgccatcgagccaggtgccatgaagccggctctacgcatctggtctccagtgcgtctccttgggccggcgtacatggcaccagccttacgcatggtgtccccggttcgccagcacagcccagtgcgggctattccacctcaccgcactggcagggcgaccgggagcattcaaccaggtaaggttgggcaggctcggtgctcaagagctccagtgcgcctgcaaggtccggtctatccagtaccacctccactcaccagccctccggtggcagccccccgcaccaggctgtctctccatttcagccctacaggtgctcccgcctgtccagcgctgctagagccctcctcctgtccagcgctgccagagtctcccgtctgtccagagctgccagagtctcccgtctgtccggagctgccagagtctcccgtctgtccggagctgccagagtctcccgtctgtccggagctgccagagtctcccgtctgtccggagctgccagagtctcccgtctgtccggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177111 lncRNA upstream 17518 51145536 ~ 51147897 (+) True G154817
TU177131 lncRNA upstream 53640 51111535 ~ 51111775 (+) True G154837
TU177130 lncRNA upstream 56341 51108800 ~ 51109074 (+) True G154836
TU177123 lncRNA upstream 66974 51098221 ~ 51098441 (+) True G154829
TU177119 lncRNA upstream 74698 51090489 ~ 51090717 (+) True G154825
TU177208 lncRNA downstream 127628 51294802 ~ 51299854 (+) True G154901
TU177876 lncRNA downstream 183452 51350626 ~ 51355466 (+) True G155515
TU177850 lncRNA downstream 220803 51387977 ~ 51400214 (+) True G155489
TU177852 lncRNA downstream 243163 51410337 ~ 51410863 (+) True G155491
TU177853 lncRNA downstream 263692 51430866 ~ 51501997 (+) True G155492
XM_036950245.1 mRNA upstream 28515 51114207 ~ 51136900 (+) False LOC110491269
XM_036950241.1 mRNA upstream 28515 51114211 ~ 51136900 (+) True LOC110491269
LOC118944166 mRNA upstream 70568 51094723 ~ 51094847 (+) True LOC118944166
XM_036950237.1 mRNA upstream 78284 51067491 ~ 51087131 (+) False LOC110491259
XM_036950231.1 mRNA upstream 78284 51067492 ~ 51087131 (+) True LOC110491259
XM_021564639.2 mRNA downstream 66531 51233705 ~ 51236559 (+) True LOC110491287
XM_021564659.2 mRNA downstream 80567 51247741 ~ 51293224 (+) False LOC110491302
XM_021564667.2 mRNA downstream 80567 51247741 ~ 51294746 (+) True LOC110491302
XM_036950262.1 mRNA downstream 149947 51317121 ~ 51339537 (+) False LOC110501653
XM_036950260.1 mRNA downstream 149950 51317124 ~ 51339537 (+) False LOC110501653
TU176287 other upstream 1064941 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2607729 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3617836 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 4180189 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 5673036 45472745 ~ 45492379 (+) True G148191
TU177860 other downstream 154622 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 245092 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 253673 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 649336 51816510 ~ 51824182 (+) False G156000
TU181296 other downstream 2854434 54021608 ~ 54021904 (+) True G158778

Expression Profile