RNA id: TU213130


Basic Information

Item Value
RNA id TU213130
length 3440
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G187919
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78366133 ~ 78369599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTCCTGCCCTGCTGCACATTTGCCATTTTGTTAGAGTAAATACATCTTAAATAGTTTATTTTCACAATCAAACTTCCAATCCCACATCCTCTCTCACATGTTCACACTACAGTTTTACAAGGGAGAAGCAAGCCCTTTTTGGTTTCAGTCCTTGGACACTGGGGGGTTTTCCCCATGTTTTTGACCCCCAAAAAGTCTCCCCTCCCTTCAGACATGGCCTGCTGGCCTTGTATTCCTCAATGACAACTGATGTCCAATTTCTAAACATTTACCTTTAGATGTGTGCTCATAACTGGCAGTCAGTCAAAGCACAGAGTATAGACAGACAAGGGACATTGTGTGAGATGTAGAATATAACAGCCAACTATAGTTCAGACAACTGTACAGTTCACATCTAACACCAGAGGTCTACTTGATAAACAAGTTACATAGCAggtctgatttgtttaacattacACAGTAGATCATTATGGGGACAAAGACCTACATTTGTTTAAGATGGGCTATTTATTTTTCAAGGTACAGAGTATCTTTACTTTATGGTTATGGAGTGCCCTATACTAATacaacacaaataatattttctgTTAAAAACACACTTTTTCACAGTTAAGACCCCAAAATCATCAACAATAAATTGAGAATAAAACACACAGAAGACCAACATCATCCCTGAATCCCTCAGAGCTCCAGAATATAATCTGTGGTCCACACAACACAGTAGAGGTGTTCCACCCAGACAGAGCCAGAAGAGGTATAGTGGCTGTTGTCAGAGGTAACGGTCAAGCCTGTGTGCAGTATCTTcatattcagacccattcatcCCCTGGGTCCAACATATGAAGGGTAGCAACCCAGGAAAGGTGAGATGATCTTGGGGAGTATTGTCTGACTGAAGGGCCCTCATGGTGGAGGGAGCAGGTCAAAAAATCTCTTACTGGTGTAATTGCCAACTGGTGTAATTGTGTTCAGGTAAGATGGGGTAATTCAGAAGAGTGTTTGTTGGAGGGGGGCAGCTCCTGGAAAACCACATACAAGAGCACGTACTGTACGTATACTAAGGAACACCACTCACATGTATGATAGCAGCAAAAAGTCAGTGAAATTAAGCATTTCTAGCGACAGAATAAAGTGATTATGTTAAGGTCTATCTTCTAGACAAGACGTCAAGGTGTTGGCTTTGACTGAAGTCTAATGAGGCATCACAATGTCCTACAGTATATGGGTCACTGTGGCTGAACTGTGGGGGTAAGTACCTTCAAAAACAGGAGGGGGAAATAAAAAGCCAGCGGCTCTTAGAAGGTAAAAAGAACACTTATTGAATTAAGATTGTTTAATTATGGCAAACTTAGTTTGgactaacacacacaaaaaccatTAGCTAATCAGACAGGGCATGCTGTACAGAATCTCATCTGGTTGGACTGTTTCAGAGTTCGTTTTTCCTCATGTCTGTTAATCAAGGGAAAGATAAACAAATCCCAGAAGGAGCAGATCTCCAATCACCACCAGTGATTCACAACAGTTATCCACAGAGGAAAGCAGACAGACCACCACAGAAACACCTGCTTCAGGCAAACTTACTACTCTAAGGCATGAAGTACTAGCTAACAAATAATAAGGCAAGTTaaacaggaccaagcagtgtTCATTTGTATTGGCAGCCCTATGCTGCGGTTAGTGTTGTATAGAGCGCAAAAGGTAGTAGGTCTATCTACACCATTCAATATCCAGACAtatctggataagagcgtctgctaaatgattcaaatgtaattgaGGAATATCACAAGCGAACCCCTAAAGTGAAGAACGTTTTCCTCTGACTTTTCTTGCAAATGAAGTTGGCTCGTACATGACCAGCTTGAATTAAATTATCTTCTCAGGGAACCAAAGATCCAACTGAGGAGGCAGTAGCGagtagaatgagagagaaggTTATTTTAGGAGGCCAAAACAGTTTTATCCCACATATTACCATTCATTTAAGGCAGGTCTTGTGCATTAGAATTTCAATTTCACAGATTTCATCCTGGAACATAAGATACAAAGGCGAGACATTTCTAGACATTCCCGTTTCCTGAGCCTTAAAAACACAGTGAGGACCGATACTTGCAATCTAGAAATGTAAAACTATACTAAACAACATACTGTTGTCTAAGCAAAGGAATAGGAAAGAAATGGATGCCAACAGTGTTTTAAAATAGCACAATCTCAAAGGGTATTTGTTCCACTTCCCTGAAAGGCTGTGCAAGAATAATCTTTCACTACATAACCATCCCATGGTAAATAATGGCACTGCATGGACCAAGGAATGACGTTAGTCTCCCATCCCTCAAACTATCATTCAGCCAAACCTTGAAGGCAACAGCAAGTAAAACATCACTCATGTACCCCTCCCTTCTCCACCCAAGAAATACAAGCAAATAATAAATAGGGATGAGAGAGATGGTTTATTCCCAATTCTTAAACCTAGTAAGACAGTAAACATTCCTATTGCACCAGAACCTACAATATCTAGTACTATATTACTCCACAAAGGGAACTCTTTAGCACACTGAcgagtgcgcgcacacacacttcTGTGGGGGAAGGCAATGGCACTCTGGGAAAATGAGTCCATCCATCGGTCTGATCCACAGCCATGCCCTCGTAAGGGCCCCGAATAAGGACTTCCTCACGGTGACAGGTCTTAAAATAGCAACAACCCATCACACAAAATAAACATCCTGGCTTACTTTACAGTGCCGAGTATGATCACCTTCAAAACCTTCGATCACAAAaaagtctttaaaaaaaagaaaggtAGGTTTGACAGCTAGACTAACCGTAAAAAAAAGAAAGGTTTGACAGCTAGACTAACCGTAAAAAAAAGAAATCCTATCTGGCGTGTCTTTTGTCATGCTCCATCCCCATACTTGTATCCGTAATAATGAGGTTACTGCAGAGCCCCTCTAGAGAGGAACAAGGAGGCGGGGGGAGGTTAAATTAGGGATGGGGATTTAGGCTACTACTGTCCAGTCTTTCCAGGGGGTCAAATGTAAAATCAGGGTTTTGAGGTGTTGGTGAAGGGGACTCACCAGGGATTGGATTGGTGACACCTCCCTTTAAGACCAGTGTTGAGACTGTAAAACAATAACTTAGCAGGAACTCATTGGAGCTGCCCAGCATGATCACACTGGTGAGAAACAGTCATTAGTGGTGTTGCTCTGGCAGGCGGACTCAAAGAGGGGACAGACAGCCTAGTCTAGCCTGGCCTGGCAGGGGCAAGATCCCCCTCTCCCAAATGTCTATGGTACAGTCAGCCTGGTGGTGTGTCTGCTTTTCTTAGACTGTACTCTTCCGTTTCAAAGTTAGTTGTTGTTTCATCCTCCACCATCATTCTTTAAGTCCATTCTGCCACTAGGTCCACTCCTCACCCCGAACTGGTAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213111 lncRNA upstream 12217 78339166 ~ 78353916 (+) True G187904
TU213084 lncRNA upstream 65359 78296723 ~ 78300774 (+) True G187878
TU213085 lncRNA upstream 71580 78294037 ~ 78294553 (+) True G187879
TU213072 lncRNA upstream 79221 78286697 ~ 78286912 (+) True G187868
TU212496 lncRNA upstream 83500 78282264 ~ 78282633 (+) True G187346
TU213216 lncRNA downstream 84962 78454561 ~ 78456189 (+) True G187985
TU213252 lncRNA downstream 159464 78529063 ~ 78529333 (+) True G188020
TU213255 lncRNA downstream 165115 78534714 ~ 78534946 (+) True G188023
TU213262 lncRNA downstream 189155 78558754 ~ 78559351 (+) True G188030
TU213263 lncRNA downstream 190409 78560008 ~ 78560213 (+) True G188031
XM_021572942.2 mRNA upstream 13488 78348080 ~ 78352645 (+) False LOC110496927
XM_021572938.2 mRNA upstream 13488 78348081 ~ 78352645 (+) True LOC110496927
XM_021572888.2 mRNA upstream 99333 78233904 ~ 78266800 (+) False LOC110496871
XM_036956224.1 mRNA downstream 24509 78394108 ~ 78451563 (+) False lrrc56
XM_036956238.1 mRNA downstream 24510 78394109 ~ 78451563 (+) False lrrc56
XM_021572971.2 mRNA downstream 24512 78394111 ~ 78451563 (+) False lrrc56
XM_036956242.1 mRNA downstream 24514 78394113 ~ 78451563 (+) False lrrc56
XM_021572950.2 mRNA downstream 33774 78403373 ~ 78451563 (+) False lrrc56
TU212466 other upstream 96088 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 188550 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 317333 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 317333 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 585340 77777127 ~ 77780793 (+) True LOC110496763
TU213209 other downstream 115225 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 209773 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2385542 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2395733 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 2396133 80765732 ~ 80766714 (+) True G191057

Expression Profile