RNA id: XM_036966188.1


Basic Information

Item Value
RNA id XM_036966188.1
length 3250
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC110512888
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4096749 ~ 4135152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGCTGGCAGACATGTTGGATTTGGGATCAGAGCTGAGCTGAGTCGGCCTCACAGTTTGGTGTCCTGGGTCTTTAGTGAGAGTACAGCAGCGCTGGATCTGGAAGCTGTGCAGGCTGTGGGTTTTGAAAGTAACATGGCTTCCCAGTCTGATCTGATGGAGCTGGACATGGCCATGGAGCCTGACCGGAAGGCTGCAGTGAGCCACTGGCAGCAGCAGTCGTACCTGGACTCTGGTATCCACTCAGGGGCTACCACCACCGCCCCCTCCCTGAGTGGGAAGGGCAACccagaggaggaggatgtggatAACCAGGTGCTGTACGAGTGGGAGCAGGGCTTCTCTCAGTCCTTCACACAAGACCAAGtgtcagACATTGACGGGCAGTATGCCATGACCAGAGCCCAGAGGGTGCGTGCGGCCATGTTTCCAGAGACCCTGGATGAGGGCATGCAGCTCCCCTCCACCCAGTTTGATGGGGCACACCCCACCAATGTGCAGCGGCTGGCTGAGCCCTCTCAGATGCTGAAGCATGCTGTGGTGAACCTCATCAACTATCAGGATGATGCCGAGCTGGCCACGCGTGCCATCCCCGAGCTGACCAAACTACTCAACGACGAGGACCAGGTGGTGGTGAACAAGGCTGCAGTGATGGTGCACCAGTTGTCCAAGAAGGAGGCTAGCCGCCACGCCATCATGCGCTCCCCCCAGATGGTGTCGGCAATCGTGCGCACCATGCAGAACACCAACGATGTGGAGACAGCCCGCTGCACCGCCGGCACCCTGCACAACCTGTCCCACCACAGAGAGGGTCTGCTGGCCATCTTCAAGTCCGGGGGCATCCCCGCCCTTGTCAAAATGCTTGGGTCCCCAGTGGACTCAGTGCTGTTCTACGCCATCACCACCCTACACAACCTGCTGCTCCACCAGGAGGGTGCCAAGATGGCCGTGCGTCTGGCCGGGGGCCTGCAGAAAATGGTGGCCTTGCTCAACAAGACAAACGTCAAATTCCTCGCCATCACAACAGATTGCCTTCAGATTCTTGCCTACGGCAACCAAGAAAGCAAGCTTATCATCCTGGCCAGCGGTGGGCCCCAGGCCCTGGTCAACATCATGAGGACGTACACATATGAAAAGCTGTTGTGGACTACCAGTAGAGTTCTCAAagtgctctctgtctgctccagcAACAAGCCTGCCATCGTAGAGGCTGGTGGTATGCAGGCTCTTGGGCTTCACCTCACAGACCCCAGTCAGAGACTAGTCCAGAACTGCCTGTGGACCCTCAGGAACCTGTCAGATGCTGCCACCAAACAGACGACCTTAGCTGAAGTAGATGTGATGCAGGAGGGTATGGAAGGTCTGCTGGGGACCCTGGTCCAGCTCCTGGGCTCTGATGACATCAACGTGGTGACGTGTGCTGCCGGCATACTGTCCAACCTCACCTGCAACAACTACAAGAACAAGATGATGGTGTGTCAGGTTGGGGGGATTGAGGCGCTGGTCCGTACCGTGCTGCGTGCCGGAGACCGCGAGGACATCACTGAGCCGGCCATCTGCGCCCTGCGCCACCTCACCAGCCGCCACCAGGATGCTGAGATGGCCCAGAATGCTGTGCGGCTTCACTACGGCCTGCCTGTGGTGGTCAAGCTGCTGCATCCCCCCTCCCACTGGCCCCTCATCAAGGCCACTGTGGGCCTAATCCGTAACCTGGCTCTATGTCCAGCCAACCATGCCCCTCTGCGTGAGCAGGGGGCCATCCCCAGACTGGTGCAGCTGCTGGTCAGAGCCCACCAGGACACCCAGAGACGCACCTCCATGGGAGGCACCCAGCAGCAGTTTGTGGAGGGAGTTCGTATGGAGGAGATcgtggagggctgtactggagctCTGCACATCCTGGCTAGAGACGTCCACAACAGAATCGTCATCAGAGGACTCAACACCATTCCACTCTTTGTTCAGCTGTTGTATTCTCCAATTGAGAACATTCAGCGTGTGGCTGCAGGAGTTCTGTGTGAGTTGGCCCAGGACAAGGAGGCAGCGGAGGCCATCGAGGCTGAGGGCGCCACCGCCCCCCTCACAGAGCTGCTTCACTCCAGAAACGAGGGCGTGGCCACCTATGCTGCTGCTGTTCTGTTCCGTATGTCTGAAGACAAGCCCCAGGACTATAAGAAGCGTCTGTCTGTGGAGCTCACCAGCTCCCTGTTCAGGACGGAGCCTATGACCTGGAACGAGACAGGAGATCTGGGCCTGGACATCGGCGCTCAGGGAGATGCCCTGGGCTACCGTCAAGAAGACCCTAGCTATCGCTCCTTCCACTCTGGGGGATATGGGCAGGACTCCATGGGTATGGACTCCATGATGGACCATGACATGGGTGCCCACCACCCCGGCCCTGAATACCCAGTCGACGGGCTGCCCGACCTGGGCCACGCCCAAGACCTGATCGATGGTCTTCCCCCAGGCGACAGCAATCAGTTGGCTTGGTTTGATACTGACCTGTAAATAGACTACTTTTTAGgtgtaTCGTCTGATCTGAATGAACCTACATTGTGATTTGGCTGGAGAAGTTGCTGGGAGGTTTTTGAAAGTGGGCTAGTATCTCAGAAAGTGCCTGACACACTACTGAAAGCTGAGTTTCCTATGGGAACACGTGGAGTGGAAGTGAAACTTTGTTCTGGTCTTTTGTGGGAGTTAAAACTGCGTTAAAGGAATTCCTGGAGTGGGTTACTCAAAGAAAATGACGCTGAAGAGTGGATCTAAAGATGGAATTTAAAACCCTGGTctgtatttttttacattttattttgtatgATTCTTCAGTCTGTAATGGTACTGATATAGCTTGTTATTATACTCGCCTGTCTTTTCTGCACTCATTTGTATCCATTTTAAGTCTCTCGTAGTGTTAAGTTATAGTGGTAATGCTCCAATTAAAATGATATGGTGTAGAACACTAATAATCAGTTGAATTGTATTCTGATCAAGTGTAACATTGTGTAGCTTTTGTATAAAACCAAGAATTGGAAATGGTCCAAATATTTTCTTGCTTTAAGTGTGCACTGTTTGTAGTGTCACAACTGTTCCAAAGGGTCTGTGGGGAGGGCAGcagtttctttttttaaatgtcttttaGTTGATAGCTGTTCAAGGAGGTGAAAAGAATCCCTAATTATTGTAGCCTGCTGTGCTTATTGGAGACATGGTCATGACATGGCTAAACAATAAAAATGGACTTTAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248111 lncRNA upstream 5829 4090347 ~ 4091041 (+) True G217761
TU248091 lncRNA upstream 28381 4068259 ~ 4068489 (+) True G217742
TU248081 lncRNA upstream 38394 4058084 ~ 4058476 (+) True G217732
TU247945 lncRNA upstream 104074 3989336 ~ 3992796 (+) True G217619
TU247934 lncRNA upstream 137328 3958720 ~ 3959542 (+) True G217609
TU248232 lncRNA downstream 159414 4294566 ~ 4294843 (+) True G217868
TU248242 lncRNA downstream 162404 4297556 ~ 4302856 (+) True G217870
TU248258 lncRNA downstream 190073 4325225 ~ 4325722 (+) True G217877
TU248295 lncRNA downstream 231972 4367124 ~ 4367347 (+) True G217903
TU248299 lncRNA downstream 235642 4370794 ~ 4371111 (+) True G217907
XM_036964020.1 mRNA upstream 71809 4022975 ~ 4025061 (+) True LOC110506729
XM_036966131.1 mRNA upstream 128605 3965458 ~ 3968265 (+) True LOC110520766
XM_036966134.1 mRNA upstream 172430 3916991 ~ 3924440 (+) True LOC118944821
LOC118964350 mRNA upstream 186833 3898226 ~ 3910037 (+) True LOC118964350
XM_036966123.1 mRNA upstream 222005 3854447 ~ 3874865 (+) True LOC110507394
XM_036966224.1 mRNA downstream 247342 4382494 ~ 4448908 (+) False LOC110510956
XM_036966248.1 mRNA downstream 265605 4400757 ~ 4448006 (+) False LOC110510956
XM_036966239.1 mRNA downstream 265605 4400757 ~ 4448017 (+) False LOC110510956
XM_036966252.1 mRNA downstream 265605 4400757 ~ 4448052 (+) False LOC110510956
XM_036966207.1 mRNA downstream 265605 4400757 ~ 4448908 (+) False LOC110510956
TU247417 other upstream 367714 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 552392 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 556964 3537839 ~ 3539906 (+) False LOC110520752
TU247382 other upstream 559611 3535177 ~ 3537259 (+) False LOC110520752
TU247395 other upstream 615334 3480316 ~ 3481536 (+) True G217146
TU248166 other downstream 7491 4142643 ~ 4143089 (+) True G217809
TU248238 other downstream 162404 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 316602 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 801945 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 809851 4945003 ~ 4961450 (+) True G218293

Expression Profile