RNA id: XR_005039678.1


Basic Information

Item Value
RNA id XR_005039678.1
length 1147
RNA type mRNA
GC content 0.47
exon number 11
gene id antol
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14508406 ~ 14511632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGAAAAAGTTGGTAAGTGACAGACATTGATTTGAACCAATGATGGTCGACTCCACATTGTCCAACCAGCAGAAAGGAAACGACCTGCGCGCGGAAGAGGAAAGTCCACTGAAACAAATCCGACCACCGAGGGGTAGACTGATCATGCATCACGTCAAGATTAAGACTGAGAAGCCAGaTGCAGAGGAGAGTGGTGCACGCAGCCGACTGGATGCAGTATTACAGGGGCTGGTAGAGAAGAGTGACAGtgagagGGAGCAAAATGAAGATGAGACAAAGATGGCAGAAGACTCTCTGAGCAAGGATGTGTCTCCATCTTCTGCTGGGAAGCGGCCATCATCACGGTTCCCACAGCACCGGAGGAAGAAACGGAAAGAGATGGATGATAGCTTAACGGAGAGCAACCAACATAAACAAAATGCCTACATTATCAAGTTGTTTGACCGCAGTGTGGACCTGGCCCAGTACACTACCAGTACCCCACTTTACCCCATTTGCCGGGCCTGGATGAGGAACAACccggcagtcagagagagagctgcatccCCAAGCCCCCCACACAGCATGGGGGAAGAGGAGGCTGCAGACATGCTCAATGGTAAGGGACAGAATGTGTATCGCCTCCCTCCGCCCACCTCCTGTCCTCTTAACCCTTCTGGAGATCCTGTCAATCTGAGGATCCCATCCACAGAAAAGCCTATTGTCAGCAAGTCTACAGATACAGCTCTTGTGTCTGGTCCCCTCATATACAACCACATAGAACGCTGGAAAAAGATCAGGCAAAAATGGAAAGAAGCGTCCAACAAGAATCAGCTGAGGTATAGCGAGAGCATCAAGATCCTGAAAGAGATGAAGGAGATGTACGACCGCTAGCTGGGAATCCCCCAGGCAGTATCCCacagcagagggaggagaaaagaatAGAGCAGGTCAGAAACACAGTCCACATGGAAGAAATGGGTCCAAGATATCTATCACATACAGGCAATAAATGTTCTGTTTGTTTTGGATCACAAAAGGAATGTTGTCTGAAGTAAAACATTTGTAAGTGTTTTTCTTTGGTCAGATTTCAAAGAGTCCTTTCAGGAGTCAACTCTTATATTAGCTACAAGCAAAATATAAATTAATAAATTACCTTAAGaggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259761 lncRNA downstream 9552 14496793 ~ 14498854 (-) True G227094
TU259735 lncRNA downstream 78961 14424463 ~ 14429445 (-) True G227068
TU259731 lncRNA downstream 91528 14415060 ~ 14416878 (-) True G227065
TU259676 lncRNA downstream 98326 14409102 ~ 14410080 (-) True G227015
TU259730 lncRNA downstream 102256 14405901 ~ 14406150 (-) True G227064
TU259830 lncRNA upstream 87157 14598789 ~ 14637418 (-) False LOC110503689
TU259834 lncRNA upstream 87157 14598789 ~ 14638314 (-) True LOC110503689
TU259851 lncRNA upstream 107307 14618939 ~ 14623213 (-) True G227162
TU259855 lncRNA upstream 108636 14620268 ~ 14625116 (-) True G227163
TU259902 lncRNA upstream 202641 14714273 ~ 14714833 (-) True G227207
XM_021591983.2 mRNA downstream 26751 14475682 ~ 14481655 (-) True LOC110510742
XM_036975404.1 mRNA downstream 111123 14389198 ~ 14397283 (-) True LOC110510581
XM_021591906.2 mRNA downstream 111124 14389198 ~ 14397282 (-) False LOC110510581
XM_021591800.2 mRNA downstream 229264 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA downstream 229264 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XR_005051407.1 mRNA upstream 7565 14519197 ~ 14524902 (-) False psenen
XM_021592025.2 mRNA upstream 11548 14523180 ~ 14524889 (-) False psenen
LOC110503689 mRNA upstream 89270 14600902 ~ 14607768 (-) False LOC110503689
XM_021591970.2 mRNA upstream 128137 14639769 ~ 14642909 (-) True LOC110510719
XM_021591890.2 mRNA upstream 144232 14655864 ~ 14667500 (-) True zbtb32
TU259726 other downstream 33240 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 506598 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 580573 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 1164031 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1283891 13223884 ~ 13224515 (-) True G226224
TU259714 other upstream 11548 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 11624 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 87157 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1024733 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 1089383 15601015 ~ 15601488 (-) True G228094

Expression Profile