RNA id: XM_021591846.2


Basic Information

Item Value
RNA id XM_021591846.2
length 5634
RNA type mRNA
GC content 0.46
exon number 17
gene id aplp1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14694606 ~ 14742899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGCGTTGATGGGCGTTCTTTTTTTTCCGGCGAGGCTGCAGCCCCATATTAGCCCAGGCTGCGATTGGAGAGAGCAAGTGCGCACGGACGCAGACGCAGGAGATATTGGAGGCAGTCACCGAACAGAATAGAGATCTTCATAGTAACTGATGTAACTGTATTTGGGAATCAATTCAGATTATAAAGAGAAAACATTCCAATTGAGAAACGAAAGGAGTGAAAATGGGACATTCAGTGTTACCCATATTGATGGTCGTATTGTCCCATTGCGTATGGGGAAATGTCGAGgcCTTGGCCATGGCTGAGGTGAATGGACCAGGGCCCCTGGTGGCCGAGCCGCAAATTGCCATGTTCTGTGGGCGTCAGCTGCTGCACATGAACCCTGAGACTGGCCAATGGGAGCCTGACCCTCAGGGCCGCCAGGGCTGCTTCACAGAGCCCAACCAGATCCTGTCCTACTGCCAAGAGATGTACCCAGCCCTACAGATCTCCCATGTGGAGGAGTCCTCCAGCCCCGTCACCATCCCAGCCTGGTGTAAGAAGGGCTGGGGCCACTGCCAGACACGCCCCTTCATCGTCATGCCCTACCGCTGCCAGGTGGGTGAGTATGTGAGTGAAgccctgttggttccagaccgaTGCCGTTTCCTGCACCAGGAACAGATGGATGCCTGTGAGAGCTACGTCTACTGGCACAACATAGCTAAGGAGGCCTGCACCGCAGACGGTCTGGAGCTGCATAGTTATGGGATGCTGTTGCCGTGCGGCGAACGTTTCCGAGGGGTGGAGTATGTGTGCTGCCCGGGGAGGGGTGGGTCCAGTGGCAGGGGGGAGACCGAGGGAGGGGATGTTCTCCCAGCAGGACCCCAGGCCCTGACCCCTCAGGTCAAAGTCAACACAGGAGTCAAAGTGACAACACCCTCCCCAAGCCCCTCTCCTGACACCGATGTGGATGAGGCAGACATGGAGGAGGAAGACGATGAGATGGTGGAAGAGAATGAGCAGGTGgtggaagaggatgaggaagaggaggaggcagtagaggatgatgaggaggaggaggaggaggaagaggaggaggaagaggaggaggagcagcagcagcagcagcaggaggttgcagaagcagcagcagtgAAAGACCCAGAGGAGTATGAGTACTCCATTGACTCTGGCCCCTACCAGGCTTCTGACTACACAGACTCCTTCTACTATGAGAAAGGCCAGGGTCAGACTGGTCGCAACCCCTCCACATCCCCACCCCAGACCAGGGGAGACAGCCtACCCACCCCTCGCCCCACAGATGGTGTGGATGTTTACTTCGAGATGCCAGGGGACGACAGTGAACACGCCAACTTCCTGCGTGCCAAGATGGACCTGGAGGAGCGGCGAATGAAACGCATCAATGAGATCATGAAGGAATGGGCTGAGGCTGACAACCAATCCAAGAACCTGCCCAAGTCTGACCGCCAGGCCCTTAATGAGcATTTCCAGTctgtgttgcagactctggaggAGCAGGTggcaggggagagacagaggctgGTGGAGACCCACCTGGCCCGCGTGGTGGCCACCCTCAACAACAACCGCAGACTGGCCTTGGAGAGCTACCTGACCGCCGTGCAGGCCGAGCCCCCTCAGCCGGAGCGGGTGCTGCAGTCTCTGAAGCGATACATGGCAGCAGAGCAGAAGGACCGCAGACACACTCTGAGACACTACCAGCACATTGAGGCCGTCGACCCCCAGAAGGCTGAGCAGATGAAGTTCCAGGTCTACACCCACCTCCATGTGATTGAGGAGAGGATGAACCAGAGCTTGGCATTACTCTACAAGGTCCCTGCCTTGGCTGAGGAGCTGCACGATGATATCCagGAGCTGGTGAAGGCGGAGCGAGGAGACATCAGTGAGCTCATGACCACTTCCTTCTCTGAGACACGCACCACCGAGGAGCTACTTCCTGctgagagtgaggaggagaaggatgacgaggaggaggaggagagagcctTCCAGAACAGGCCCTACCCACCCCGCATTGACCCACAGCCCAACACTAAGAAAGCCTCTACAGACGAATATGACTATGCGACATCTGAGAGAAGCCCCACGTATGAATATGAGGAGAAAATTAACACCTCTGTGGAGCTCAAGCAGGTGGTCTACAAGTCTCCTGAGATCCAGACCGATGAACTGCAACCAGATGCCCTGGAGACGTTCAACCGCGGGGCCATGGTGGGGTTGCTGGTGGTTGCCGTGGCCATCGCCATGGTGATGGTGATTAGTCTGTTGCTGGTGCGCAGGAAGCCGTATGGCACCATCAGCCACGGCATTGTGGAGCAGGTTGACCCCATGCTGACCCCAGAGGAGCGCCAACTAAACAAGATGCAGAACCACGGCTACGAAAACCCCACCTACAAATTCTTTGAGCAAATGAACTGAAGCGGTGGGTGTGGCCTCCCGGTCATGCCCAATCACACGAGGCGCTCCCTTTCCTTGCTTCCCCTCCTAGGGGCAGTCCCAGTCACACCCCCTATGATGTATTAAGATGTATCATTACGACCAACACTTTAATGTAACTTGACAAGCAAATAGGGGGTATACGCCCCAATCCTCTGACCAACCATGTCCCCACATCAGTTTTGGAATGTAAACCAGTAACAGAGACGTATTACCAACTGACCCATCCTCTTACTCTTCTGGTCTAGAATAAAGGGGTGGACATTAATGCCACAGTgtaacaatcatctcctttggaGAGATTCACTCCTGTCTACTTGGATAGGAATGCCATTGGAATGGCTTGAGTTGACCCCCTTATTCTTAATAAAATGGATTGGTATTTGTCAGAAACTGACTCAATATTGAACACTGCATTTTGTTTTGTATGTCATCTGTTTATTCTTTATTGGATTGTGTTACAGCTCTGATTCATTATATTCCAGTTCAGATAAATGGTGTAAAATGTGAACAAACAATATAGTATAGCTGATCTAAAACTCCACACAAACTGGTTCTCTATCTAAAGCTACACTGACTCTGACATGATGACCACCAAGCCAGCCCCACCTCCATGAGTCAATGAAGGACATCTTCTTTCAAAGGCAGGCACAGTTGTAAAGGTTAAGCAGAGATGAGGAGGTTGGGAATGTGAGGTGTTGAAGCTTGATTGACTTAGTTGTTACTTAGGTATTACTCACACCAACATATATTATCAATCCATAGTAACATGGGTTGGTGGTCTTTTGATGTTCAGCCCAACCTCATCCTTCAGTCTGTGACATCTGACACAATCAGCACCCAGAGCCTATTCCATGTCATGTGAACTATATAATTGAACTAATGTACCAAATGTACCATTTAAGTTAAGTGAATGACTGCTACCTAAAAAAATTGTAACAAAGTAATGAAAAGTCCATTATTTTAATGAAAGCATGCAGATTTGGTGTATGATGCTACCGTCTTTGTGTCGTTCCTGTTCTTTGCTTTTGATAAGATGGAAATGTAATATCTTTAGAAAAAAATATGACTTCAAAATAGACATTTCTAGAATGAATTTGCATCAGTGTAATGGAATAATAACAAAAAAGAAGAATACCTTGTGCTGTTCAGAGAGAGAACATTTTCCTAACATGGCTGATTGAAAACGGACTGTTGTAAAAAACCAGCACAAGATGACACAATTAACTTCTGACTGAATGTATTTTAGGTAGACGTTGAGACTCCATTTCCTCTTCGATAGTGCATCACTCCCCTAGTAGAATCCCAAGGACAAACCTGTAATCAGTAGACAAGCTACATGTCCAAAACCTTCCTCATTATCTCACTGTAGTTTAACACTGGATGTCTCTTTTCACTATTTGCAGGTCTGAATGAGAACAGTGGGATGTCATTCATTATTGTGGTGCAATGGACTTCAGCATTAGGGAACATAGTGATGTTGTCAAACATGGTGATATTGGGTAACAGTTGCATGTAAAGGAGGTATGCCGAGGACTGGACTATTGCTCAGATTGGGTGGGACCACAATATTTGCTCTAGCACACCTTAGTGAGTTATTTTCAGTTTATTGCTTCAAATTCAAGTTGAATCTTTATTAGGGACATAGCAGGTTTCAGGCAGGATGAACATATAGACGCTGTATATAAACCAGTTGAATGTTAGTCCACTAGGGAGATGTCGCATCTCACTGATGCATCTGTCACAGTTATTATGATCAATATcatgcactgtatatagataaTAAGGGATTGTCCCCTTTTCAATGGCTGATTGTTGACCTCTTGGATGGCTtttatatttaatttattttccaCTACATGATTTTGTTACCAGAGAGAGTTCTTCGTGTTGGATGGTTACATACACAGTAGGAGGTTTCTTCATAATCAACAGTGTCAACTGCAACTACTGTTGGCctactgtactacagatgatCCTAACCAAAACCAATCATCTTTCACTACTCTCAGAATTCTGAAAATGTTACTTTTTAAAACATCACCAGTCCTGAAACATCCTGAGAGGTTCATAATTTATTTGTAACTTATGGCTAGGTTGTTCTGCTGTGTACTCCATGAAACCACTGGTGACACAAGGGAGTAAATTATTGATCACATCAGAGGAGAGATGTGGCTGACTCACCCTCAAAccattctgttttttttattcaaaCACTGCTTTGAATATGGGGAAGATGAGTTCAAATACTTGACCTCAGAGATTTGAATTGTCCATGTATTGCTTTTGGATTGTGGGAATCACAGGTTGTGGTTACTGCATCAAGATAATTAGAGAGCTGAGGTAGTCTTTGTATAATTTGTACAGCTCTGTTTCGTGAAAAACGTATGTTCACAGTTTAAGTCAGTTGAACCTTGTATCGATACTACTGAAACCATAGAAGAGAATAAGCTTGCCTATGTTTCCCCAAAGACTCAAGGTTTTCCTACCAGCATTTAGCAGATGTAGAATGGTGTATAGTGTAGTGACTGAACACACATTTGTATGTCCTCTCTTGATTAAGATACTTCTATGTTGgccttcctcccctccccagcCAATGAAAATGTAAACAATTATATGgagagtttaattgctgcattATTGCCTTTTACAATGCTGTGTTTTGGATGTAATTCTGTATTTTTATTTCTAATAATCAATTGGATTGAGGGTCATGTTTTCTCACTGTATGAAAAATGTAGTAGCTTGTATAAGAATACCTATAGGCACCCTAAAGAGGTTATGTGATGTCTAACAGTTCAGATACAGTGGACATACTCTGTCAGTAAGTCTATAACTAAATTGTCCATGGTGTGGCGCCAAGCACAACTGTGAACAAATGATTGCTCTTTGTCAGACACAGATACTGGCTGTATATAATGTGAACTCCCACCATTTTGACTGTACTCTGATTGGAAAGATACTGATGACATCACTGAGGGAGCTGATCTTCAAATCCCTTCAGAACTTGACCAAACACATGCTTTGCTCTAGAAGAGGTCAGACAACTGACTAATTTGACCAATTGTCCCTGAGCTATGTTGAGTGTAATTCATGTGCAAGAAATCTGAGCAATGGAGATCTGATTAAGCTAATTAAAACTGTAATAAAATTTGAAACAACCCACGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259834 lncRNA downstream 56292 14598789 ~ 14638314 (-) True LOC110503689
TU259830 lncRNA downstream 57188 14598789 ~ 14637418 (-) False LOC110503689
TU259855 lncRNA downstream 69490 14620268 ~ 14625116 (-) True G227163
TU259851 lncRNA downstream 71393 14618939 ~ 14623213 (-) True G227162
TU259761 lncRNA downstream 195752 14496793 ~ 14498854 (-) True G227094
TU260033 lncRNA upstream 151350 14894249 ~ 14894545 (-) True G227331
TU260042 lncRNA upstream 156935 14899834 ~ 14900139 (-) True G227340
TU260199 lncRNA upstream 247564 14990463 ~ 14991406 (-) True G227472
TU260203 lncRNA upstream 254318 14997217 ~ 14998401 (-) True G227476
TU260162 lncRNA upstream 261388 15004287 ~ 15017987 (-) False G227438
XM_021591890.2 mRNA downstream 27106 14655864 ~ 14667500 (-) True zbtb32
XM_021591970.2 mRNA downstream 51697 14639769 ~ 14642909 (-) True LOC110510719
LOC110503689 mRNA downstream 86838 14600902 ~ 14607768 (-) False LOC110503689
XR_005051407.1 mRNA downstream 169704 14519197 ~ 14524902 (-) False psenen
XM_021592025.2 mRNA downstream 169717 14523180 ~ 14524889 (-) False psenen
XM_021592094.2 mRNA upstream 37168 14780067 ~ 14834024 (-) False LOC110510856
XM_021592087.2 mRNA upstream 37168 14780067 ~ 14834027 (-) False LOC110510856
XM_021592063.2 mRNA upstream 37168 14780067 ~ 14834028 (-) False LOC110510856
XM_021592079.2 mRNA upstream 37168 14780067 ~ 14834028 (-) False LOC110510856
XM_021592056.2 mRNA upstream 37168 14780067 ~ 14834029 (-) False LOC110510856
TU259832 other downstream 57896 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 169752 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 169752 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 219440 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 692798 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 793466 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 858116 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 963335 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 1044723 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 2096490 16839389 ~ 16839839 (-) True G229373

Expression Profile