RNA id: XR_005044924.1


Basic Information

Item Value
RNA id XR_005044924.1
length 1383
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC118954848
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39282509 ~ 39288215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAACAAAGCCCTGAGGAGGTTCAAAAGGTGGAAGGGTTTCCAAATTGGATCAAGTTTTCTACGGAGATTGGTGGTGATAGATGAATCCAAGTTCTCACACAAGAGAAAGatATTCTAAAACGGGTGGACAACAATCTTTTAGGATATCCAACATTGAGCCAACTGCTCCCGGGGATAAATGCTTTGGATCATCCAACATCAGATGTTATAACTATCCCTGATGAGATTTTGGATGAGCAACTGGAGGACACCGAATTTTACGAGATATCTATATGTcaaatgtatgtattttttaATGATAAAATGTATAACCGACACCAAAGGCCCTACACCACGAGCGGACATGGTCGAGACGGAAGGGGTACCCCGGAACGTAACGAGTAAAACAATGAATTCGGATCATTTCCCCGCTTTAAATGACTTTTCAGAGGTCGTTAATTTGCAGTTGTTTGAAATGGACAGACAACATGATGAGGACAACTCCGAGATAGAAACAATATGCAGTCAAGATATTCTAAAACTGGAGGACCACGATTTTTACGATATATCTCTATGTCAGTTGTACGTATTTTTTATGATAAAATGTTTTGTATATTTTGTATAAATATAGGTGAATATTATTGTAGAAAAGCCCAAGGACATTGGTGGAAACGTCCTTTAATTTGAGGCCTCGTACTCAGAGGTGCCAGGGGATGCCTTAATTAGGTCGGGTGGAAATGTACGACCAATCTCATCCCATAAAATTAGGAAATAGCTATAGCCTGAactcgctgctttctcttccttaactccgACTAATCCAGAAGCTCTGTGCGTCCAGGAATCCACAGAAGTCCACCGACTCGATTACCTTTCATCTGAACTTTCTGTTGCGATCGGGAGAGTGGGCCATCAGGTAATGTTTAGAGTTATTACTGCAGAGTGCGGCTTGGAGCGCACGCTTCAATTCTAACGTGATTTGGTAAATGATCAAGACCCTATGGATCATGACAGGCCAAAGTGATATGGTTAATATGTCATGAAATTACACGTACACGTGAAAACACTTGAAAGGGTGAAATATGAAGCGGCATTGTTTGCGGAACTGAATGATTCCGAAATCAAACTAATGGGTATTATAGATGGAATAACCGATCACTGTATGTATTATTCTCCTCATGATTATGATAAATAGTGACAAACATTAATTACTCAAGGATGATACCTATTGACTTCTTAATGGACCGGCATGTGGAATTCGCTAAGTATGTTAATAATGATTGTTAGGATTTGATCTTTGTGATTATGAATTTGCTTGGATACCGGTTTTGAATTTGATTGGGATACCAGTTATTCTGTTTCCTATGTTATGCAgcacagactactcagtaaatatatacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291335 lncRNA downstream 6952 39275335 ~ 39275557 (-) True G255686
TU291332 lncRNA downstream 9260 39272997 ~ 39273249 (-) True G255683
TU291328 lncRNA downstream 29743 39252552 ~ 39252766 (-) True G255679
TU291303 lncRNA downstream 31127 39237182 ~ 39251382 (-) True LOC110519952
TU291301 lncRNA downstream 31245 39232931 ~ 39251264 (-) False LOC110519952
TU291424 lncRNA upstream 119871 39408086 ~ 39410397 (-) True G255751
TU291488 lncRNA upstream 179362 39467577 ~ 39515975 (-) True G255808
TU291581 lncRNA upstream 329428 39617643 ~ 39621075 (-) True G255897
TU291596 lncRNA upstream 358135 39646350 ~ 39646598 (-) True LOC110519961
TU291600 lncRNA upstream 368812 39657027 ~ 39657546 (-) True G255916
XM_036974067.1 mRNA downstream 13043 39258791 ~ 39269466 (-) True LOC110519953
XM_036974065.1 mRNA downstream 13090 39258791 ~ 39269419 (-) False LOC110519953
XM_036974066.1 mRNA downstream 13339 39258791 ~ 39269170 (-) False LOC110519953
XR_005044896.1 mRNA downstream 30359 39231882 ~ 39252150 (-) False LOC110519952
XR_005044901.1 mRNA downstream 30359 39231882 ~ 39252150 (-) False LOC110519952
LOC118944667 mRNA upstream 57550 39345765 ~ 39364915 (-) True LOC118944667
XM_021596863.2 mRNA upstream 100560 39388775 ~ 39393540 (-) True LOC110519954
XM_021596865.2 mRNA upstream 123017 39411232 ~ 39508802 (-) False LOC110519955
XM_021596864.2 mRNA upstream 123017 39411232 ~ 39508805 (-) False LOC110519955
XM_036974071.1 mRNA upstream 123017 39411232 ~ 39508811 (-) False LOC110519955
TU287636 other downstream 2549069 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2924538 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3137937 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4386213 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4392555 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 111046 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 356356 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 530433 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1034291 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1046995 40335210 ~ 40335440 (-) True G256632

Expression Profile