RNA id: XR_005039919.1


Basic Information

Item Value
RNA id XR_005039919.1
length 1596
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110505381
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60267642 ~ 60269899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgtgcatggccacgcagtcatgggtgaacagggagtacaggagagggctgagaacgcaccctctCTGTCTGAGCCGTTCAATTGCGACTCTaccttgtctctatactgacgctgaGTTTGTTTAaatgccttgcagagggaatagctacactgtttgtattcggtcatgtttccggttgccctgattaaaagcagtggttgcTCTTTCAATCCATGTtcattgtacagtatgtgtttttgAGCTTTGACATGATTGATGTATGTCCATTTTAAAGTGGTTAAAATTCATACATAAGTTGAtgacgttagccacaacaaattggaattcataacataATATATGTTTTGCAAATTTTTGAAAACACattgtacaaattgcaattcCCAACATATTTTCAAAATtacaattcgtaacatatcatacaaattgtaattcataacatatcattaAACATGGATGATGGTcttccacaaatgaatacataaaatACGAAATGTAACATATAATTTTCAATGGAGTGTCTCGGGTGTACGTATAGAATAATACGAAATGATCTGagaccacatttccccctcacaAAAAACAGTGGCACTTGACATTCCCCCGTGCTTGCATTGACTTTGCTGACAGCTACTTTGAGGGAAAAATGTACTTAGTGAGATATGtgattgtcccacctagctatcttaagatgaattcAGTAACTgaaagttgctctggataagagcatctgctaaatgactaaaatggacATGTAAAATGTCTAGCTAATCATAGGATTTAGCCAGCTTgctttcaataatgtttcaactcgAACTggcaagctaacgttagttagctagccaACTCCTTTCTACTCGGACAAAGATATGATAACTAACCCGGGTTTGCAAGCTAGCATTTGGGGGCTTCGTCTGCTAACTCAAAACAACATGCTTGTTCTCATTAAAGTTTATTGCATATTTTCTAGGGCAGAAATAAATGAAGGATGGTAGTTGTCTACTACAATTATAGCTATTGCTCTGGCAGCAAATAGCAAAACGTATCAGCAACCATTCAGCAATGTACACAGATGGTTGCATAGTAACAGCATCAGCGTTACCTGCCTGAATCTATTCTGTAGGTACAGTACCTCTATTAGCATATACATTACTTCTAAACTAGATAAAGTTATTTTCTCACTATATTTCTTCAGTGTTGATATTTTATTTAATTCCCAGGTTACGTACAAAACCTGGTGGATTTGTTGTTCAGCAGTGTCGTGGGAAGCCCCCACCAAATCGCGAGATGTTACAGAAGGCTGAGGCAGTGGCCAGACACTAGTCCTGCTTCAGAGTAATGGAGGACACTTGAATCAGGAGCTGGGTCAGATATAGGGGCCAAGGTCGGGCTTATTATTACCAGTATCTGTGACGAGAAGGGACTGGAGCTGATCTATGCTGCCATGCCCGTCAGGCGTTGGCAAACACCACCGAAGGGACAAAAGATGGGCAGAAGAGATAGTTTTGAAATGGAATCCACTGACTGAAAGAAAGGTTGATACTGATGTCTGAATTAGGAGAGACCTTGTACTCAGTATTAAAATGATACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318829 lncRNA upstream 5060 60262368 ~ 60262582 (+) True G281128
TU318782 lncRNA upstream 51530 60215884 ~ 60216112 (+) True G281082
TU318754 lncRNA upstream 99200 60168239 ~ 60168442 (+) True G281054
TU318746 lncRNA upstream 101494 60164479 ~ 60166148 (+) False G281052
TU318750 lncRNA upstream 101494 60164628 ~ 60166148 (+) True G281052
TU318843 lncRNA downstream 17489 60287388 ~ 60303967 (+) False G281141
TU318846 lncRNA downstream 20783 60290682 ~ 60292657 (+) False G281142
TU318847 lncRNA downstream 20783 60290682 ~ 60292657 (+) True G281142
TU318872 lncRNA downstream 52254 60322153 ~ 60323132 (+) True G281166
TU318906 lncRNA downstream 109309 60379208 ~ 60379424 (+) True G281197
XM_036974796.1 mRNA upstream 215348 59870559 ~ 60052294 (+) True erbb4b
XM_021597499.2 mRNA upstream 685686 59556678 ~ 59581956 (+) False ikzf2
XM_021597497.2 mRNA upstream 685686 59557068 ~ 59581956 (+) False ikzf2
XM_021597498.2 mRNA upstream 685686 59557072 ~ 59581956 (+) True ikzf2
XR_002470749.2 mRNA upstream 752581 59513445 ~ 59515061 (+) True LOC110505376
XM_021581343.1 mRNA downstream 7346 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA downstream 7545 60277444 ~ 60286077 (+) True myl1
XR_005051347.1 mRNA downstream 112775 60382674 ~ 60383352 (+) True LOC118964303
XM_021597524.2 mRNA downstream 364640 60634539 ~ 60654313 (+) True tgfbr2l
XM_036974822.1 mRNA downstream 1061460 61331359 ~ 61370875 (+) False LOC110520315
TU317976 other upstream 213225 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 213225 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2477310 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 3002750 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 4351509 55915329 ~ 55916133 (+) False G275553
TU318844 other downstream 17489 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 470340 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 621625 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 621625 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 763867 61033766 ~ 61037105 (+) True G281996

Expression Profile