RNA id: XM_021581343.1


Basic Information

Item Value
RNA id XM_021581343.1
length 1352
RNA type mRNA
GC content 0.51
exon number 6
gene id myl1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60277245 ~ 60286080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAATAAACATCTTCTGACGCTCATCCTCGGCCGCGACTTACATGGGGTGTCCCTATTCCATGTATAGAACAGCCCCCCACGCCTCTCCTGGTGCTGTCCAATCCCGTCCCTTGGGCTGCTTTGACAAGGGTACTTTGTAAAAtatactcatatatatatacgcCCAGATGCTCCCTTCATGCTCCGAGTCTTCTCCAAGCTTACGCGGGAACTGTCTGAATTATCGGTGAAGTAGCTAACTAACTTACTCTCTGCTAAAATGGCACCCAAGAAGGACGCTAAGGCGGCACCCGCCAAGAAAGCCGAGCCTGCAAAGGCAGCCGCACCTGCTCCCGCACCCGAGCCTGATGTGGTAGCTGCTCCCCCTGCACTTGACTTGTCCAAAGTCAAGGTGGAGTTCACTCCCGACCAGCATGAGGACTACAAGGAGGCTTTCGGTCTCTTTGACAGGGTGGGTGACTCGAAGGTGGCTTACAACCAGGTCGCTGATATCATGCGCGCCCTGGGACAGAACCCTACCAACAAGGAGGTGCGCAAAGTCCTGGGCAACCCCTCCGATGAAgACATGGCCGCCAAGAGATTGGAGTTCGAGGCCTTCCTTCCCATGCTCCAGCACATTGTCAACGACCCAAACAAGGGAACCTTCGATGACTACGTTGAGGGTCTGCGCGTCTTTGACAAGGAGGGCAACGGCACCGTGATGGGAGCTGAGCTGCGTATTGTTCTTGGAACACTGGgtgAGAAGATGAGCGAGGCTGAGATTGATGGCCTCATGCAAGGACAGGAGGACGAGAACGGCAGTATTAACTTCGAGGCCTTTGTCAAGCACATCATGTCTATTTAAGGATCCTCCAGCTGCAGTGGCTAACGAGGAAGCTAACGTGTTATCTGCAGACCCAACGGTGTCAGGACATCCACTCCCCCACAGTTCTTCACCACCACCTGATAAAGAGACAGGGGGAAAATGGACTATGAGATGTAATTTTTGTTGTTAGTTTCATTCTTTTTCTTTTGGTCTGACTCCGACCTCCGACTCTGCTCTCTATTTTCCTCGATTGGAAGCTGTCCTTTTTTCTCTCCAGCCAACCGTCAGATGCTCTTGTTGTCTTGTCCCCTGGTATGCCTCTCCACCGTGGGTCGGTGAGGGAAAAGAGGTAGGGATGACTCACTGAAACGTTGCAGTAGTTAAGATAAACCTTCCATCACTTACTTACTCCCTGGATTGGGCCAGTAGAGGTGACTGGCTTTGCTCAAGACTGGCCATCAAAACTCACTCTCCCTATCTATCCCCTCAGTCTTAATTTATTTATCTCCTCTGCTATTTCACATAATAAACTTTTCAAAAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318829 lncRNA upstream 14663 60262368 ~ 60262582 (+) True G281128
TU318782 lncRNA upstream 61133 60215884 ~ 60216112 (+) True G281082
TU318754 lncRNA upstream 108803 60168239 ~ 60168442 (+) True G281054
TU318750 lncRNA upstream 111097 60164628 ~ 60166148 (+) True G281052
TU318747 lncRNA upstream 111414 60164628 ~ 60165831 (+) False G281052
TU318843 lncRNA downstream 1308 60287388 ~ 60303967 (+) False G281141
TU318846 lncRNA downstream 4602 60290682 ~ 60292657 (+) False G281142
TU318847 lncRNA downstream 4602 60290682 ~ 60292657 (+) True G281142
TU318872 lncRNA downstream 36073 60322153 ~ 60323132 (+) True G281166
TU318906 lncRNA downstream 93128 60379208 ~ 60379424 (+) True G281197
XR_005039919.1 mRNA upstream 7346 60267642 ~ 60269899 (+) True LOC110505381
XM_036974796.1 mRNA upstream 224951 59870559 ~ 60052294 (+) True erbb4b
XM_021597499.2 mRNA upstream 695289 59556678 ~ 59581956 (+) False ikzf2
XM_021597497.2 mRNA upstream 695289 59557068 ~ 59581956 (+) False ikzf2
XM_021597498.2 mRNA upstream 695289 59557072 ~ 59581956 (+) True ikzf2
XR_005051347.1 mRNA downstream 96594 60382674 ~ 60383352 (+) True LOC118964303
XM_021597524.2 mRNA downstream 348459 60634539 ~ 60654313 (+) True tgfbr2l
XM_036974822.1 mRNA downstream 1045279 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 1045463 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 1189796 61475876 ~ 61505428 (+) True LOC110520316
TU317976 other upstream 222828 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 222828 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2486913 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 3012353 57264567 ~ 57264892 (+) True G277296
TU312836 other upstream 4361112 55915744 ~ 55916133 (+) False G275553
TU318844 other downstream 1308 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 454159 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 605444 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 605444 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 747686 61033766 ~ 61037105 (+) True G281996

Expression Profile