RNA id: XM_036974822.1


Basic Information

Item Value
RNA id XM_036974822.1
length 1549
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110520315
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61331359 ~ 61370875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTGTCTCTTCTAAGCCAGTAATGCAGCACCTCCTCTCCTTCCGATTCTCCAATGTTCACAGCTTGGCCGGAGCTCGTCGTCTTCCCGGCTACAATTCCACCGGATTTTAAACACTCCTACCCGGCCTAAATCAGGACGAGACCACGCTAAAGGGGGAATCAACATGTCCAGTGAAAGACAAGGGCGGTCAGATGATGAGAGTCCAAGCACCAGCAGTGGGAGTTCTGATGCGGACCAGAGAGACCCGGCAGTGCCGGAGCCCGAGAGAAAACAGCAGCCCGCCACACCCCCTCAGCAACAGAAGAAACCTACCAAATTATCCAGCAAGACTACCGCCAAGTTGTCCACTAGTGCTAAAAGAATCCAGAAGGAGCTTGCTGAGATTACTCTGGATCCACCACCTAACTGCAGTGCGGGACCCAAGGGAGACAACATCTATGAATGGAGATCCACCATCCTGGGACCACCAGGCTCGGTGTACGAGGGAGGGGTCTTCTTCTTAGATATCACCTTCTCATCCGACTACCCCTTCAAGCCACCAAAGGTGACGTTCCGCACCAGGATCTACCACTGTAACATCAACAGCCAGGGGGTGATCTGCCTGGATATCCTGAAAGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCCCTGCTCACAGACTGCAACCCTGcggACCCTCTGGTTGGTAGCATTGCCACTCAGTACCTGACCAACAGAGCCGAGCATGACAGGATAGCCCGACAGTGGACCAAGAGATACGCCACATAGAGGTCACGACTCCCGACCCCGTCCTGTCTGACCCCCCGTCCCCCCAGCCCCTCTGCCTGCAGTGTGAAGGTCCCGGAGGCGACGTCACATTGTGCAACAAATCTTTATAGCCTTTACAATATGGACTTCTGTGTATCTGTCTGATTACTGATTCTACTCCTCCACATTTTACCCTGCTATGAGGACTGGGTCTGAAGAGAGACCGAGAGATAAGCAAACCCCAACAGGCATTGTCTCACGTCAGATAGCGCAGCTGCGTCTCCGTCTGCACTGCTGATAGTTCATGGCAACACAGGGCGTTAGAATGACGCCATCTGTCGGAAGACAATGCCCAACAACAGGTAAATGTATATTGGAGTAGAATTTTGTAGCTGTAGATTTTAGCTATGTTTAAATGCCTCTACTTGCAAGTCTTGCTTCTTTGGGATATTAAAAAATAACATGTATTTTGTGATGTAATAAAGGAAACTATTCCTCAACCAAATATGATGGTGCATTTTAGCCTTCTCCATTATCTGTATGAAGTTAAAGAAGAAAAATCAACTAGCTGTTGTAGATTATTAGAGAAGATGATGTCATTTATATGAACGCCAGACACCCATTTCCACTTACGTAGTTACATTATACTGTTGTGACTGTTTTACCTTTGTCAATTTGTAATGAAAACAAGATTTCATTTCAACCTTTTTGTAGTGCAGCAAAAGATGAGCCACCACTGTAACATCCCCAAAACACAATAAACTTGTCCCAAGGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320119 lncRNA upstream 107377 61206640 ~ 61223982 (+) True G282245
TU319802 lncRNA upstream 303719 60991906 ~ 61027640 (+) True G281976
TU319783 lncRNA upstream 308300 60967569 ~ 61023059 (+) True G281958
TU319795 lncRNA upstream 344220 60986538 ~ 60987139 (+) True G281970
TU319782 lncRNA upstream 364721 60966328 ~ 60966638 (+) True G281957
TU320237 lncRNA downstream 2853 61373728 ~ 61374361 (+) True G282351
TU320236 lncRNA downstream 3727 61374602 ~ 61374869 (+) True G282350
TU320243 lncRNA downstream 10349 61381224 ~ 61381473 (+) True G282357
TU320259 lncRNA downstream 26910 61397785 ~ 61398000 (+) True G282373
TU320260 lncRNA downstream 27170 61398045 ~ 61398461 (+) True G282374
XM_021597524.2 mRNA upstream 677046 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 948007 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 1045279 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 1045282 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 1061460 60267642 ~ 60269899 (+) True LOC110505381
XM_036974824.1 mRNA downstream 105001 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 219183 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 238986 61609861 ~ 61647253 (+) False LOC110504376
XM_036974827.1 mRNA downstream 244268 61615143 ~ 61647253 (+) True LOC110504376
XM_021597554.2 mRNA downstream 277830 61648705 ~ 61663408 (+) True LOC110520321
TU319833 other upstream 294254 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 437581 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 437581 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 574009 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1040792 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 586513 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 822729 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 996739 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1335456 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1645451 63016326 ~ 63022591 (+) True G284313

Expression Profile