RNA id: XM_021597565.2


Basic Information

Item Value
RNA id XM_021597565.2
length 4654
RNA type mRNA
GC content 0.47
exon number 31
gene id LOC110520324
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61773433 ~ 61832413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCTGTCAGCCTCGTTTTCGTAAAATAGGACAACACCTAGTAAAAACCGCGacgggagagaggagtggggattGGCGAAACCGCTCCACCCACATAATGGGCGAATTGTAACATTGTAGCACTGGAGTGTCACTATTTTCACAACAAACAAAACGCAGCAGCAATTCTACAACAAATATTTTACAAGAATCAGTAGCTATGTCGGCAACACTGTCGCGCGGCTCGCTCCAACCTGGCCAGCAAAAACTGGCCGAGAAATTTACCATTTTGAACGACAGGGGCATCGGAATGCTCACTCGCATCTATAATATCAAGAAGGCTTGTGGTGACCCCAAAGCAAAACCATCCTATCTAATAGACAAGAACCTGGAGTCCGCTGTCAAGTTCATTGTCAGAAAATTCCCAGCAGTTGAAACACGCAACAACAATCTTGCACAACTACAAAAAGAGAAGTCTGAAATCCTTAAGAATTTAGCGTTGTATTACTTCACATTCGTAGATGTGATGGAATTTAAGGACCATGTCTGTGAGCTACTGAACACTATCGATGCTTGCCAAGTCTTCTTTGATATTACTGTAAACTTTGACCTGACCAAGAACTACCTTGACTTAGTAGTGACCTACACTAACCTAATGATGCTATTGTCTCGGATTGAAGAGAGGAAAGCTATCATTGGCCTCTACAACTACGCCCATGAAATGACACATGGATCAAGtgaTCGAGAGTACCCGAGGCTGGGACAGATGATTGTTGACTACGAGAACCCGCTGAAAAAGATGATGGAGGAGTTTGTTCCCCATGGGAAGTCGTTGTCAGACGCCCTGCTCTCCCTCCAGATGGTGTACCCCAGGAGAAACCTGTCTGCTGACCAGTGGAGGAACGCACAGCTACTCAGTCTCATCAGTGCACCCAGCACCATGCTCAACCCAGCCCAGTCAGACACAATGCCCTGTGAATACTTGTCCCTGGACGCCATGGAGAAGTGGATAGTTTTTGGCTTCATTTTATGTCACGGGGTCCTGAACAGTGATCAGGCAGCTCTGAGCCTGTGGAAGCTGGCTCTTCAGAGCAGCACCTGCCTCTGTCTCTTCAGAGACGAGGTGTTCCACATCCATAAGGCTGCTGAGGACCTGTTCATCAACATCCGCGGCTACAACAAGCGTGTGAATGACATCAAAGAGTGCAAAGAACAAGCTCTGTCACATGCaggTTTGATGCACAGAGAAAGACGCAAGTTCCTGAGATCTGCCCTGAAGGAGCTGGCCACAGTCCTATCTGACCAGCCAGGGTTACTGGGGCCTAAGGCCCTGTTTGTGTTCATGGCTCTGTCATTCGCTCGGGATGAGATCATTTGGCTGCTACGACATGCAGACAACATCCAGAAGAAGAGCACAGATGACTTTATTGACAAGCACATTGCAGAGCTGATCTTTTACATGGAGGAACTGAGGGCCCACGTGAGGAAGTATGGTCCTGTCATGCAGAGATACTACGTCCAGTACCTGTCTGGCTTTGACGCCGTGGTGCTCAACGAGCTAGTACAGaATCTGTCCGTCTGTCCTGAGGATGAGTCCATCATCATGTCCTCCTTCGTCAATACCATGACGTCCCTCAGCGTCAAACAAGGTGTTACAGTGGAAGACGGGGACGTGTTTGATTTCAGGGGCATGAGGCTGGACTGGTTCAGATTGCAGGCCTATACCAGTGTGTCCAAGGCTTCTCTGGGCATCGCAGACCACCGTGAGTTGGGCAAGATGATGAATACCATTATATTCCACACCAAGATGGTGGATTCCCTGGTGGAGATGCTGGTGGAGACATCTGACCTCTCCATATTCTGCTTTTACAGTCGTGCGTTTGAGAAGATGTTCCAGCAGTGTTTGGAGCTGCCCTCCCAGTCTCGTcactccatctccttccctctgctCTGTACCCACTTCATGAGCTGCACTCATGAGCTCTGTCCTGAGGAGAGGCACCACATAGGCGACCGAAGCCTGTCCCTGTGCAACATGTTTCTGGATGAAATGGCTAAACAGGCCCGCAACCTCATCACAGACATCTGCACCGAGCAATGCACGCTCAGCGACCAGCTGCTGCCAAAACATTGTGCCAAAACCATCAGTCAGGCGGTGAACAAGAAGTCAAAGAAGCAGATGGGGAAGAAAggcgagcctgagagagagaagcCTGGAGTAGAGAGCATGAGGAAAAACAGGCTGCTGGTCACCAAcCTGGATAAGCTTCACACGGCGTTGTCCGAGCTGTGTTTCTCCATCAACTACGTACCCAACATGGTGATATGGGAACACACTTTCACTCCTAGGGAGTACCTCACCTCACACCTGGAGATACGCTTCACCAAGTCTATCGTGGGGATGACCATGTATAACCAAGCGACCCAGGAGATAGCCAAACCGTCTGAGCTGCTGACCAGTGTCAGGGCTTACATGACTGTGCTCCAGAGCATAGAGAACTATGTTCAGATAGATATCACCAGGGTGTTCAACAACGTGCTGCTGCAGCAGACACAACATCTGGACAGTCACGGAGAACCAACCATCACTAGCCTCTACACCAACTGGTATCTGGAGACTTTACTGCGCCAAGTTAGCAACGGACACATAGCTTACTTCCCAGCCATGAAGGCTTTTGTCAACCTACCTACGGAGAACGAGCTCACCTTCAATGCAGAGGAATACTCTGATATCTCAGAGATGCGGTCCCTGTCGGAGCTGCTGGGGCCCTATGGGATGAAGTTCCTCAGTGAGAGCCTCATGTGGCACATCTCCTCCCAGGTGGCCGAGCTCAAGaaaCTGGTGGTGGACAACGTTGAGATTCTGACCCAGATGAGGACCAGCTTTGACAAGCCTGAACACATGGCTTCTCTGTTCAAGAAGCTCTCATCAGTCGACAGTGTTCTGAAACGGATGACCATCATCGGAGTCATCCTCTCATTCCGATCCCTTGCTCAGGAGGCACTCCGAGATGTGTTGTCCTGCCACATCCCATTCCTGGTGAGCTCAGTGGAGGATTTCAAGGATCACATTCCAAGAGAGACCGACATGAAGGTGGCCATGAATGTGTATGAGCTGTCATCTGCAGCAGGTCTGCCCTGTGAGATAGATCCTGCCTTAGTGGTGGCCCTCTCCTCTCAGAAGTCAGAGAACATCAGTCCGGAGGAAGAGTACAAGATAGCGTGCCTGCTGATGGTCTTTGTGGCGGTCTCTATGCCCACCTTGGCAAGCAACGTCATGTCCCAGTATAGCCCTGCTATCCAAGGTCACTGCAACAACATCCACTGTCTGGCTAAAGCTATAAACCAGATCGCTGCAGCTTTATTCACCATCCACAAGGGCAGCATCGAGGACCGCCTCAAAGAGTTCCTCGCACTTGCCTCCTCCAGTTTGTTGAAGATCGGCCAGGAGACTGACAAAACCACAACAAGGAACAGAGAATCTGTCTACTTGCTCCTGGACATGATTGTGCAGGAGTCCCCGTTCTTGACCATGGACCTTCTGGAGTCCTGCTTCCCCTATGTGCTGCTCCGTAATGCATACCATGCTGTCTACAAGCAGAGTGTGTCTTCCTCCGCCTGAGAgccctgagaggaggagaggaaagaatgggttagaggagagagagattagaagagggagagagcgagtgagagactCCTCACCTTGTCTGGAGTTCAGCATGCAGATAGTGAAGAGGAGACAAGGGCCGtatgtatcaagcgtctcagagtaggagtgctgatttggGATAAGTGTTGcctttttagatcataatgaataactTTAACTTGACAggggggagacctgatcctagatcagcacttctattCTGAGAAGCTTGATATATGCAGGCAGCCCCAGAGCTCTTTACTGAGAATATAAATATATGGCTTTGGACAACATGAGTCTTATATGATGATATGACCATTGTGGGTGTGCTGTGTTTCAACTTACAGTcttaaagaaaacaaaaaaatagtATTATTGGTTTTGTGGGATCAGGGTTTTTCTTTTCATACAGTTTTATGAATTAATCATTTGTTTACTTAATCTGATGTAAGCTTTGTTGACAATGATCCGTGACAATACACTACTACTTAATTTAATTTTTGAATATTGTCTTAATTTTTAACCCATTCAATATTTAGAAACTTAACACTAAAAATGCTATTATCGGTGAAGGGGAATGTGCAAAACTAATTGCAGATATTTGGAAAATGATGATACACAGTTATATTCATCATCATTATCTGTCGGTTATTACAGTATGTGTATCTTTGTGAATTTgtgttatttacattttttgtgtTTCTTTGAGATATTTGCCAAACTGTTGAGAAAACATAGCATCTTATATTATTTGGAGCTAACCTGAAATGTTGGTATTAAACTTAAATATTATGAAAACTGATGGTTGATATTTGTACAAAGCATAGAATAATTTTTTAACTAAATGCCTCATTGGCATAACTACTCCATAGTACCTGTCTGTACGGTATATAATAAACATTCTTTCATATTTATTGAATGTTTATACATAGTTTTCCTTTTACCACTTTTATATgttttcaatgtttcaatgaaccGTGTATCCTCCATAACGTGATAAATAAATCTTAGGCTATATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320481 lncRNA upstream 75050 61693535 ~ 61698383 (+) True G282560
TU320459 lncRNA upstream 119236 61653550 ~ 61654197 (+) True G282538
TU320399 lncRNA upstream 204300 61568709 ~ 61569133 (+) True G282486
TU320397 lncRNA upstream 208083 61564123 ~ 61565350 (+) True G282484
TU320394 lncRNA upstream 209701 61563464 ~ 61563732 (+) True G282483
TU320559 lncRNA downstream 9400 61841813 ~ 61843829 (+) True G282634
TU320587 lncRNA downstream 12877 61845290 ~ 61849674 (+) True G282658
TU320640 lncRNA downstream 124975 61957388 ~ 61964066 (+) False G282707
TU320646 lncRNA downstream 149658 61982071 ~ 61982481 (+) True G282712
TU320677 lncRNA downstream 170254 62002667 ~ 62003022 (+) True G282725
XM_021597554.2 mRNA upstream 110025 61648705 ~ 61663408 (+) True LOC110520321
XM_036974825.1 mRNA upstream 126180 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA upstream 126180 61609861 ~ 61647253 (+) False LOC110504376
XM_036974827.1 mRNA upstream 126180 61615143 ~ 61647253 (+) True LOC110504376
XM_036974824.1 mRNA upstream 268005 61475876 ~ 61505428 (+) True LOC110520316
XM_021597566.2 mRNA downstream 4252 61836665 ~ 61841206 (+) False LOC110520325
XM_021597567.2 mRNA downstream 4253 61836666 ~ 61841206 (+) False LOC110520325
XM_021597568.2 mRNA downstream 4253 61836666 ~ 61841206 (+) True LOC110520325
XM_021597580.2 mRNA downstream 288786 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA downstream 288797 62121210 ~ 62125952 (+) False LOC110520332
TU319833 other upstream 736328 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 879655 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 879655 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1016083 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1482866 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 124975 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 361191 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 535201 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 873918 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1183913 63016326 ~ 63022591 (+) True G284313

Expression Profile