RNA id: XM_021597601.2


Basic Information

Item Value
RNA id XM_021597601.2
length 3202
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110520346
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62367489 ~ 62408857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagcgaacaagaggcagggagagagagagagagagagagacagggagagagagagcgcatgtgagtgtgtgtgtgagggagaagAAACGGCACACAGTGGAGTAGTGCTCAGTGACTGGTGGCTGAGGTGAGGTGTAGAGCTGTAGGGGACTTCCTAATAATCAGGGGACCTGAAGACCCTGTCTTTTGTCAAAGAGGAATCAAAACGATATGGGCTCTGTAGAGGCTGGACTAAAGGGCTGAAGGAATATGGAAGAAAAAAAGGAGAAACGGAATAAAGGTAGAGGAATGTTTTCAGTGTGACTGTTTTTCCCAAACCACCATTTTCCATCCATCACATCCGGCGAAACTCAACACCTTCCCAGCACAGAGGGCGGACCTGgctagaagtgtgtgtgtgacagtaagaaagggaggaagagtgTCTGTGACACCTGTCGTCACTCATTATGCTGTTGATCCATCTCCatagcactgacacacacaggtgCAGTTCCTAGCGAGCGCAGCAGACACCTGAGAATTTTCTGACAAACACATAGCTCCTGTCTCATCTTCTCCATTGAAATGACGATGTCAGGTTTAAACCGAGCGATCGCTGCCTTCTGACAGTGTGGATACCTTCTGTCCAAACTGGCACACTGGAGTTGAGCACATTCTTATCATTATACTTTCCTGATTTCAAATGGATTCAACCTCTTTGATCAACAGGTAATAATGTGGACCTGAGAAAAGGATTGAATGTGATATATCGTGCTTAGGGTATTTGCCCTCCGGTTTGGAATACTTGGAACAGAGCGAAAGTCATAGAGCTCTCTAttgttcggggggggggggggggggggtttgctaAGTTATTGTTGCTCTCCGTTTCTGTCCGTCATTAGCTACGACTACTTCAAGAATTAACCGAGGTGAAGTCTGTACCCATGGACAGCCTTCTCTGACTTAATCCCACATGTAGTTTAACACTGACAGACGTTATGAGGGTTGACTTTGAGCTCTGAGCATGTGGAGACTCTTAAGGACCAGACCtatccctctctgctcctctctcaccACGTAACAGACTTGTAAGAGTTAGTGTGCCATTGTAAGGGACGTGCTGGAGGTGTATGGCGACTGACATAATGAACCTGCATGGGAACGTATCGGAGTTGATCTCTTCTGCCGTCAGAGCCATAACGCTTCCGTCCTTTGACCCCGAACCTGACCCTTGGCCTAATGGTCCAGAGAGACTTCTGGGAAATGAAAGCATGAATTTTTCAAATGGGTGTAATGGGAATGATGGCGGCAATGTGCATGACTTTGGCAACTGGACGCATAGCGGTAAGGTTTACAGTGATGAAGCAAGGATTCTGGCATCATCGCAGTGTGTGAAGGGGATGAAAGCAGTGGATAAGAACTGGGCTGCTTTGCTAATCCTGGCGGTCATCGCCGTTACAGTGACGGGTAACATCCTGGTCATCATCGCAGTGTCTCTGGAGAAGAAGCTCCAGAACGCCACCAACTACTTCCTGATGTCGCTGGCTGTCGCCGACATGCTGCTGGGCATCCTGGTCATGCCCATCTCCATGGTGACAATTCTCTATGACCACTGGTGGCCCCTGCCCTCGGACCTGTGCCCTATCTGGATCTACCTGGATGTGCTGTTCTCCACAGCCTCCATCATGCACCTGTGTGCCATCTCTCTGGACCGCTACATCGCCATCAGAAACCCCCTCCACCACAGCCGCTTCAACTCCCGAACCAAGGCTCGCCTCAAGATCATGGCTGTCTGGACCATCTCTGTGGgtATCTCCATGCCCATCCCTGTCCTAGGCCTGCGGGACCACACAAAGGTATTTAAAGATGGCAGCTGCCTGCTGACAGATGACAGTTTCGTCCTGGTAGGCTCCTTCGTGGCCTTCTTCGTCCCCCTCACCATCATGGTGGTCACCTACTTCCTCACCATCAGCGCCCTGCAGAATGAGGCTACACTCTGCCTGGACCAGCTGGTGCCCAGGCCCAAGTGGAGTGCCACCCTGACCCTGGGATTCTTCCCACAGTCCTCGCTCTCCTCAGAGAAGCTCTTCTTCAGGCGTTCGCTCAGCCGTGACacgagaggggtgggaggaggggtTGGCGGGGCTGGGGTGGACCCGCGGTACGGGCGTCGTACCATGCAGTCAATCAGCAATGAGCAGAAGGCCACCAAGGTCCTGGGTGTGGTCTTCTTCTTGTTCGTGGTCATGTGGTGTCCCTTCTTCATCACCAATGTGCTGGCAGTGGTGTGCAACCCCATGAACTGTGACCCGTGGGTGATGGGGGGGCTGCTGAACGTGTTCGTGTGGGTGGGATACCTCTCCTCAGCCGTCAACCCTCTGGTATACACTCTGTTCAACAAAACGTATCGTGCAGCCTTCTCCCGCTACGTACGCTGCCAGTACAGCCCAGAGAAGAAGCCTCTGCAGCTCATGTTGGTTAATACCATCCCTCCACTGGCCTACAACTCCACCCACCTGCCCCTGGAGGAAATAGGGTCCCTCAGGAATGGGGCCCACAGTGGTGGAGGACCAAATCAAACTCAGACAACGACAAGGCACCCAGGGACCAagatgagagcatcagctgtgtGAGAGGTTGTGAGCCTGTGAGGACTGAATCTCCCATAATCCTAGTGAGATCTGCTGTGTTTTGATCACGATCTCGCCTTGTTTCCTGAAGGAAATCTTGGGAACGGAGGTTCCTGTGCTGGAATGTGTTCAGTAGCTCTGTGGTGAGACTCATGCCAGAGAGGAATATGTGAAGAGAGAGGGTCCactcccatcaaaatctgtccacGCGCGAATACAGTGATAAGCTGTAGGAAGCAGGGagtacagagagaggaaaagacaCAACCTGCCTCACAAACACTTAAACTAGTTACACCAGAAGAGAACAACTGAGCTAAAGCAAAATTATCAGCAATAGCCAGGGGCCATGAGGGGATACATTTCCCCAAAATGTTCATACACATAGCCTGGATACCAGactgtttagctaacattccactccttgtgtGCCAAAGATGTTTCACAATGACACATCAAGGAGTGGATTATTAACTAAACAGACTAGTACCTaagctacagtggcttgcgaaagtattcacccccttggcatttttcctattttgttgccttacaacctggaatttaaatagattttggggggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320878 lncRNA upstream 47096 62303483 ~ 62320393 (+) True G282907
TU320783 lncRNA upstream 193127 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA upstream 193127 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA upstream 195597 62169746 ~ 62171892 (+) True G282822
TU320751 lncRNA upstream 237377 62126644 ~ 62130112 (+) True G282786
TU320950 lncRNA downstream 2827 62409223 ~ 62409441 (+) True G282976
TU321741 lncRNA downstream 17018 62423414 ~ 62425547 (+) False LOC110520349
TU321739 lncRNA downstream 19297 62425693 ~ 62430935 (+) True LOC110520349
TU321806 lncRNA downstream 110405 62516801 ~ 62518422 (+) True G283779
TU321835 lncRNA downstream 170087 62576483 ~ 62577684 (+) True G283802
XR_002472968.2 mRNA upstream 80671 62281719 ~ 62286818 (+) True LOC110520345
XM_021597600.2 mRNA upstream 94660 62254960 ~ 62272829 (+) True LOC110520344
XM_021597598.2 mRNA upstream 112678 62249459 ~ 62254811 (+) True med4
XM_021597596.2 mRNA upstream 163739 62200831 ~ 62203750 (+) True LOC110520341
XM_021597594.2 mRNA upstream 167420 62193287 ~ 62200069 (+) False LOC110520339
XR_002472969.2 mRNA downstream 17024 62423420 ~ 62426300 (+) False LOC110520349
XM_021597610.2 mRNA downstream 128250 62534646 ~ 62542031 (+) False rubcnl
XM_021597609.2 mRNA downstream 128251 62534647 ~ 62542031 (+) True rubcnl
XM_021597612.2 mRNA downstream 137181 62543577 ~ 62547782 (+) True dhrs12
XM_036974865.1 mRNA downstream 192281 62598677 ~ 62612475 (+) False LOC110504388
TU320785 other upstream 170538 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 406014 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1330384 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1473711 60891524 ~ 60893778 (+) False G281714
TU321897 other downstream 299935 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 609930 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 719494 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 860723 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 984535 63390931 ~ 63391284 (+) True G284599

Expression Profile