RNA id: TU322125


Basic Information

Item Value
RNA id TU322125
length 3812
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110520355
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62770924 ~ 62815230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGTTTCTTCCAGTCATTGGTTTGTATGCATCCATAAAAAGGCAGCACAACTGAAACCAGTACTGATATTtgtggcagagggagagaaagacagtgagtataggaaaaggagacagagagattctTAATCTACTCTCTCTGCTGCTACCTCGTTTGGCTTTGCTCCCAGTGCATTCATTGTGGGTGGGAAATATCCCAGTGAAAATTCTGCAAAAttaagacaaagacaaacagtcacacacacagaggcagactGTGACCAAAAATGGGCCCTgtcatttctaacacactggccatTTTGTTCCTTGAGGACCTCATTATTAGCCAGATGATTATCATGTTGAGTTAAAACCTAAGTTAGACAGGCCCAGTAGGCTGAACCAGCCCATCTGGCAAGTTCTCAACATATCGTACAAATtataattcgtaacatatcatacaaaaggTGTCAGAGTCTATCTAGAGGAGAgcgaaggagtcaggcgcaggacaggtAAGAGTAAAACCACTGTGTTTACTGAGCAGAACACGTGTCAAACTGTCAGTCTATCTAGAGGATAGTgaaggagtcaggtgcaggacacaGGTAAGAGTAAAACCACTGTGTTTACTGAGCAGAACACGTGTCAAACTGTCAGAGTCTATCTAGAGGACAGtgaaggagtcaggcgcaggacacaggtaagaGTAAAACCACTGTGTTTACTGAGCAGAACACGTGTCAAACTGTCAGTCTATCTAGAGGATAGTgaaggagtcaggtgcaggacacaGGTAAGAGTAAAACCACTGTATTTACTGAGCAGAACACGTGTCAAACTGTCAGAGTCTATCTAGAGGACAGtgaaggagtcaggcgcaggacacaggtaagaGTAAAACCACTGTGTTTACTGAGCAGAACACGTGTCAAACTGTCAGTCTATCTAGAGGATAGtgaaggagtcaggcgcaggacacaggtaagaGTAAAACCACTGTATTTACTCCATCCGAGAACGGAACAAAAATCCTGttataaaacaaatacaaaacaggATACGAACTCCAACACATGAaagacaatcacgcacaaaacagaaagggaaaccagagggttaaataaggaacataatcatgagatgggaaccaggtgtgtaaaacagacaaaacaaaaggaaaaatgaaacatggatcggtggcagctagaaagccggtgacgttgaccgccgaacaccgcccgaacaaggagagggaagaacttcggtggaagtcgtgacaaaagGGATGattgacatccacaaatgaatacataccatacgtaATATGTCATATTCATCTGAGTGTCCTGGATTTttgtttactatgttatgtccaGATTGCAAGGCCAAAGCATAccgatctacagtgccttgcaaaagtattcatccctcttgacgtttttcctattttgttgcattacaacctgtaatttaaatagatttttatttggatttcatgtaatggacatacacaaaatagtccaaattggtgaagtgaaattaaaaaaaatgattGTTTCAAATATGTTTcagcatatgtattcacctcctttgctatggagcccctaaataagatctggtgcaaccaattaccttcagaagtcacataagtggcacatgatctgtcacatgatctcactatacacctgttctgaaaggccccagagtctgcaacaccactaagcaaggggcaccacaaagcaaggggcaccatgaagaccaatgagctctccaaacagatcagggacaaagttctggagaagtacagatcagggttgggttataaaataatatctgaaactttgaacatcccatggagcaccattaaatccattattaacaAAAATTGAAAGATTATGGCACCACAATAAACCTTCCAAGAGAGGGCCACTCACCAacactcatggaccaggcaaggagggcattaatcagagaggcaacaaagagaccaaagataaccctgaaggaactgcaatgctccacagcggagattggagtatctgtccatagaaccattttaagccatacactccacagagctggtctacagaagagtggccaaaaaaaagccattgcttgaagaaaaaaataagcaaaaaaggcatgtggaagactccccaaacatatggaagaaggtactctggtcagatgagactaaaattgtattttttggccatcaaggaaaacgctatgtctggcacaaacccaacacctcccatcaccctgAGAAAACcctccccacagtgaagcatagtggtggcagcatcatgttgtggggatgtttttcatcagcagggactgtgaaactggtcagaattgaaggaatgatggatgtctCTAAATATAGGGAAatccttgagggaaacctgtttcggtcttccagagatttgaaactgggacggaggttcaccttccagcaggacaatgaccctaagcatactgctaaagcaacactcgagtggtttaagggggaaCATtttaatgtcttggaatggcctagtcaaagcccagacctcaacccaattgagaatctgtggtatgacttgaagattgctgtacacTAACGGAACTCATCCAACTttaaggagctggagcagttttgccttggagaatgggcaaaaataccaGTGGCTAGACGTggcaagcttatagagacataccccaagagacttgcagctgcaatgggcaaaaatcccagtgactaatagagacataccccaagagacttgcagctgtaattgctgaaaaaggtGTCTTTGGGGGGGTATtggctttggggggtgaatagaaCACTctcaagttttccgtttttttgtcttatttcttgtttgtttcacaagaaaaaatattttgcgtcttcaaagtggtaggcatgttgtgtaaatcaaatgatacaaatccccccaaaatacattttaatttcaggttgtcaggcaacaaaataggaaaaatgcccaAGGGGTTGAAAACTTTCGCAAGTAATTGTATCTACCATCAGTCCTCAGATTTTCAGGCTTATATGAAACTAACTTAATTGACATAACACACATAGCCCACAGAGACTAGTAAATCGGGACTGGGGATAACTACAGACCCTGTGTGTAACCTTCCTTTAGTTTAAGCTCTCATTCTGCTACTGAGCACAGGGTTCATGTCTTCCAGACATGAGGGGGTGAGTGtgttactgtagctgtcagacTGGATGCTGTTTGGGTTGGTTACTATGGGTAGGGTTTTGGTTTCTAAAAACAGACCTTTACTGGCACATCCAGTTTTCAGAATAGAAAGTGTGTGTTTGAAGTAATTAATAAATAAAGACACTATATAAAAGTCACCATGACGGGTTTGAATTCCAGCCTGTCGACATCCAGAGACTGCTACAGGAGAACAGACAAGATACAGGTAATATTGATTTGCGATgtgcaaaatatattttgctgTGCTGTGCCCGAACTCCCTCAGATATAGAATGTGACAGTGAATTTCCATGTAGAGTTGAACTATAGTTAAATTGTGAACTGTCTTGTCTTGTTATTGTCATAAAAACCTTTGTTAGCTGTTTGAGCAATATGAAGACATCTAGCGCTTATTCCTCTGGAGGAGAAAGACTTCTGTTCACTATGAAGACTGGGGTTAGGTTCAATATGGAGGTCATTGTGTCAATATGAAcagtgtttatgttgttgtgatgttctccacctcctccttttCTACCAGGCAAAGCCTCAATAAACATTACTGTGCCACTAAATTACTGTGtgtccacttggagacaccagttagacctcAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322111 lncRNA upstream 42344 62763921 ~ 62768887 (+) True G284057
TU322092 lncRNA upstream 60598 62748428 ~ 62750633 (+) True G284045
TU321903 lncRNA upstream 88491 62722295 ~ 62722740 (+) True G283867
TU321895 lncRNA upstream 96048 62714856 ~ 62715183 (+) True G283859
TU321896 lncRNA upstream 97383 62713143 ~ 62713848 (+) True G283860
TU322160 lncRNA downstream 8979 62824209 ~ 62824528 (+) True G284091
TU322162 lncRNA downstream 14455 62829685 ~ 62830227 (+) True G284093
TU322164 lncRNA downstream 16189 62831419 ~ 62831637 (+) True G284095
TU322165 lncRNA downstream 16849 62832079 ~ 62832414 (+) True G284096
TU322251 lncRNA downstream 47516 62862746 ~ 62863728 (+) True G284174
XM_036965040.1 mRNA upstream 98491 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 110018 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 162716 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 164279 62623416 ~ 62646952 (+) True LOC110520352
XM_036974871.1 mRNA upstream 198756 62598712 ~ 62612475 (+) False LOC110504388
XR_005051352.1 mRNA downstream 42983 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 132088 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 132088 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 298437 63113667 ~ 63119407 (+) True LOC110520363
XM_021597625.2 mRNA downstream 309150 63124380 ~ 63129015 (+) False LOC110520364
TU321897 other upstream 104261 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 402374 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 614280 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 849756 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1774126 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 201096 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 310660 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 451889 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 575701 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 891338 63706568 ~ 63722064 (+) False G284986

Expression Profile