RNA id: TU259731


Basic Information

Item Value
RNA id TU259731
length 1290
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G227065
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14415060 ~ 14416878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAATCCAAATTGTCTTGAATGGGATAAGATCCAATATAATGTCGATACTTCTCAGATGTGAAGAAGTGGGGGAACCAGCCTTTCACAGATTTTCAAAACCCAAGGCCTCTGGCATTTGAGCCAATCTCATGGGTAAGAAGCTTAAACTGTCAATGTATCTCTGGTTGAAGGCAGGGTCTACAAAACACAAGATTTTACTACCTTGAGCTATGATACTGGGTGCAACGCCTTGCTGTATCAAGGGGTTCAGAAGAAGGTAAGAGTCATCGGCTCTAGCATTGTGCGCTATAAACGTGAAGTTTCTGTACTGGGGTTTTCTGTGTTTTAGAAAGAGCAGTGCACAATTGGGTCCCTCTGCCGACCACTTTTCACCCTTGAAAGTCATGGTAGATACAAAAATAGGCAAATGAACCCCCGATTGCTGATTTGTCTCACAATCATAGAACACGTATTTCTCTGAATGTTCATCTTCATCCAAGGGCTGAATATAACACTTGTGTGACCCTTCTTGAACCACTTCAGCATCTCTGCTTTTCAAAGGCCCTTTACAGATTGGACAGTGTATGATTCCACACACATGCGGTTTAGGGCTATCTATTTTAAGGTTGAAATTGCAATGACATTTTGGGCATTTCTTGTTAATGTCACAACTGCTTACAGATTTACAGGCCTTGGGGTGCCATGTTTCAATTTTGTGTTTTTCGTAACAGTAGGCCGAACAACATGTGCGGTGACAATCCTCACAGGGGGTCAGGTTTAAGGGATGCATAGGGCAATTTTCATCCAGACATAATTAACAGTAATAACGGCACGAGTTTATGAGGTAGGCCCTTTTATTGCTTATTATTTCTGATTGCATTAGGCTATCTAGCTTCCTTCTCTGACCCCCACCACCCTGGAGTTGACGTATTATTTGCACTACAAGCTCGAGGGTCCTATCGGCTATGACGGATAAATTTGACTGAACAAGTCGTTCTAGCACGGCGATAAATTGTTCAAGATCTGCTTCGCCATTGGGTAAAATAAGAGATACCGTGTTATGCAGGCTATCTCCATAAATGTACAACTGTAAGACATCACGTGGTTCGCCATAATCTCTTGCCCTATCTAACAGTTCGGTCAGAGTATCCAACATCATTACGTACAACACAGCATAGTCAAGATTCTGATTCACCCATGTGAAATTGAAAACTGTCGAATCTCTGTATTGTTGAATTTATTTCGGTACACAACCCGAACACTTCGATCAATACCGTCTCCTTCCTGatttattagacaattttccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259676 lncRNA downstream 4980 14409102 ~ 14410080 (-) True G227015
TU259730 lncRNA downstream 8910 14405901 ~ 14406150 (-) True G227064
TU259669 lncRNA downstream 31149 14377464 ~ 14383911 (-) True G227008
TU259672 lncRNA downstream 33110 14358176 ~ 14381950 (-) True G227011
TU259678 lncRNA downstream 93834 14320720 ~ 14321226 (-) True G227017
TU259735 lncRNA upstream 7585 14424463 ~ 14429445 (-) True G227068
TU259761 lncRNA upstream 79915 14496793 ~ 14498854 (-) True G227094
TU259830 lncRNA upstream 181911 14598789 ~ 14637418 (-) False LOC110503689
TU259834 lncRNA upstream 181911 14598789 ~ 14638314 (-) True LOC110503689
TU259851 lncRNA upstream 202061 14618939 ~ 14623213 (-) True G227162
XM_036975404.1 mRNA downstream 17777 14389198 ~ 14397283 (-) True LOC110510581
XM_021591906.2 mRNA downstream 17778 14389198 ~ 14397282 (-) False LOC110510581
XM_021591800.2 mRNA downstream 135918 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA downstream 135918 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975394.1 mRNA downstream 137915 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_021591983.2 mRNA upstream 58804 14475682 ~ 14481655 (-) True LOC110510742
XR_005039678.1 mRNA upstream 91528 14508406 ~ 14511632 (-) False antol
XM_021581777.2 mRNA upstream 91534 14508412 ~ 14511494 (-) False antol
XM_021581762.2 mRNA upstream 91534 14508412 ~ 14511632 (-) False antol
XM_021581769.2 mRNA upstream 91534 14508412 ~ 14511632 (-) False antol
TU259117 other downstream 413252 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 487227 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 1070685 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1190545 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 1234788 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 11915 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 106302 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 106378 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 181911 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1119487 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile