RNA id: TU259726


Basic Information

Item Value
RNA id TU259726
length 543
RNA type TUCP
GC content 0.53
exon number 2
gene id G227060
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14428793 ~ 14475166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctaactacccattcaccccgttccccacctgttcccttttttccctctgattaggtccctatatctctctctgtttctgctcctgtccttgtcggattcttgtttgtttgtgtcattcatgcctgaaccagactgtcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtccatctgagcctacccatgtttggtaattaaagaagctctgtttaagttgattcgcttttgggtcctcattcacgcaccgtaacagaagaatccgaccaagaatggacccagcgacttcggatcctctccactcagccgtcgagatccagggagcgatgctaggcagacacgagcaggaattgtctgctgctcgacatgccgttgagaccctggccgcccaagtctccaacctcacagaacaggttcaccatctccgcctcgatccaccggccacttccagggctttcgaatctccggagcccagaatcaataacccgccgtgttactctggggagcccactgaatgccgctcgttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259731 lncRNA downstream 11915 14415060 ~ 14416878 (-) True G227065
TU259676 lncRNA downstream 18713 14409102 ~ 14410080 (-) True G227015
TU259730 lncRNA downstream 22643 14405901 ~ 14406150 (-) True G227064
TU259669 lncRNA downstream 44882 14377464 ~ 14383911 (-) True G227008
TU259672 lncRNA downstream 46843 14358176 ~ 14381950 (-) True G227011
TU259761 lncRNA upstream 21627 14496793 ~ 14498854 (-) True G227094
TU259830 lncRNA upstream 123623 14598789 ~ 14637418 (-) False LOC110503689
TU259834 lncRNA upstream 123623 14598789 ~ 14638314 (-) True LOC110503689
TU259851 lncRNA upstream 143773 14618939 ~ 14623213 (-) True G227162
TU259855 lncRNA upstream 145102 14620268 ~ 14625116 (-) True G227163
XM_036975404.1 mRNA downstream 31510 14389198 ~ 14397283 (-) True LOC110510581
XM_021591906.2 mRNA downstream 31511 14389198 ~ 14397282 (-) False LOC110510581
XM_021591800.2 mRNA downstream 149651 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA downstream 149651 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_021591815.2 mRNA downstream 151648 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_021591983.2 mRNA upstream 516 14475682 ~ 14481655 (-) True LOC110510742
XR_005039678.1 mRNA upstream 33240 14508406 ~ 14511632 (-) False antol
XM_021581777.2 mRNA upstream 33246 14508412 ~ 14511494 (-) False antol
XM_021581762.2 mRNA upstream 33246 14508412 ~ 14511632 (-) False antol
XM_021581769.2 mRNA upstream 33246 14508412 ~ 14511632 (-) False antol
TU259117 other downstream 426985 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 500960 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 1084418 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1204278 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 1248521 13177178 ~ 13180272 (-) True G226187
TU259714 other upstream 48014 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 48090 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 123623 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1061199 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 1125849 15601015 ~ 15601488 (-) True G228094

Expression Profile