RNA id: TU287482


Basic Information

Item Value
RNA id TU287482
length 609
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G252135
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36399833 ~ 36400740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagactcctctttcaATCTGCACACatagtctgcacaacactgccaggagctaggatcaagggagacactcaagttttttaacttcagtctggttttagaccccatttAAGCACTgtgactgcactcgtgaaggtggtaaattacctttcaAAGGCTTCAGACCAGGCTCTGCATccgtcctcgtgctcctagaccttagtgctgcttttgatattatcgatcaccacattcttttggagagattggaaacccaaattggtctacacagacaagttctggatTGGTTTAGAtgttatctgtcggaaagatatcagtttgtctctgtgatggtttgtcctctgacaaatcaactgtacatttcggtgttcctcaaggttccattttaggaccactattgttttcactatatattttacgtCTTGGTGATGTAATTTGGAAACATAATTTttactttcactgctatgcggacgatacacagctgtacatttcgatgaaacatggtgaagccccaaaattgccctccctggaacgctgtgtttcagacataaggaagtggatggcggcaattgttttacttttaaactcagacaaaacagagatgctagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287474 lncRNA downstream 6218 36393348 ~ 36393615 (-) True G252127
TU287472 lncRNA downstream 9871 36389498 ~ 36389962 (-) True G252125
TU287471 lncRNA downstream 10848 36388333 ~ 36388985 (-) True G252124
TU286980 lncRNA downstream 27620 36371805 ~ 36372213 (-) True G251696
TU286971 lncRNA downstream 35223 36364340 ~ 36364610 (-) True G251687
TU287601 lncRNA upstream 180651 36581391 ~ 36581648 (-) True G252248
TU287604 lncRNA upstream 182701 36583441 ~ 36583657 (-) True G252251
TU287608 lncRNA upstream 184498 36585238 ~ 36585472 (-) True G252255
TU287613 lncRNA upstream 190900 36591640 ~ 36592079 (-) True G252260
TU287483 lncRNA upstream 203523 36604263 ~ 36605654 (-) True G252136
XM_036973958.1 mRNA downstream 282289 36112187 ~ 36117544 (-) True stmn1b
XM_036973959.1 mRNA downstream 282913 36112187 ~ 36116920 (-) False stmn1b
XM_021596651.2 mRNA downstream 290644 36102843 ~ 36109189 (-) False LOC110519653
XM_036973939.1 mRNA downstream 1196890 35183012 ~ 35202943 (-) False si:dkey-34d22.1
LOC110519907 mRNA upstream 35641 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 86135 36486875 ~ 36505339 (-) True LOC110504056
XM_021596781.2 mRNA upstream 143430 36544170 ~ 36568553 (-) True tent5ba
XM_021596793.2 mRNA upstream 211075 36611815 ~ 36628902 (-) False zdhhc18a
XM_021596801.2 mRNA upstream 211075 36611815 ~ 36628903 (-) False zdhhc18a
TU286962 other downstream 41862 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 255261 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1503537 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1509879 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2040382 34357275 ~ 34359451 (-) True G249485
TU287636 other upstream 331105 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 2998521 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3243831 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3417908 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3921766 40322506 ~ 40322898 (-) True G256616

Expression Profile