RNA id: TU318844


Basic Information

Item Value
RNA id TU318844
length 3056
RNA type TUCP
GC content 0.38
exon number 2
gene id G281141
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60287388 ~ 60303967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTCGTAGTTTTTTTATTGTCATTAATTGTTAAGAGCATTTTTATATTAGTACCTTATCAACAGGAGAAAAAACTGTGTACATCTAATTTTAATGACATTAACAGTTGCTGTAGGTTGGGGTAGAGGATAGGAGATAGGGGGATGCAGAAAGTACATAGAAGCAAACAAACATCAGGAATActaggagaggaaggagggctgAATACCACAATGGCAACAGAAAAAATACACCGTAACACTTTATCAAACAGATGCAACAATATTTGTTGAGTTTCCTTTTTTTAAGTTTGTTtatatgaaatgtattttttttatgcaTTTTCCCCCTTTATTTCCCCACCCTAAATGTTTTACACAAAACAAACCTAGCATCTAGAAGTGAACTGTAAGGACACAGGGTCCAGAGTTCCACAGCTGCTTCCTAAATTGAATATTTAAATAATAGTCATAGTTTCATTCACAATATTGTTCAGACAACTGCAAGCCCTCTTGAGTGCATTCTCAGCCTGCTCGAAGAGCCTTGGGTTGTTCATCAAACACTATGGACTAAAAGATCTTACAGCCATCCAATGCCTACTGTAGCTAGCGTTAGTGAATGGATCGTGATCACAGCTTCTGTGAGCTTTCAGCTACATCAAAGTTTCTTTTGAACTGAGATTTGTGAGATGAGAATCACTGCAGCATCCTCTTAAACTTAACCAGGACTGGCAAACCAGCCTTCTAGAAGAAAAACTCCCAGAGAGAACTCTTGAGAGTAGCATTATTTAGTACTCTGaaagtaaaatatattttataatcagAAATATGTCATGTGTATCTGAGAATTGTATTATGGCATTGCCTTTGCCATTGAGATTTTATGTTGGGACTCTTAATATGAAACTACCCTTCCCAGACTCACCTGCGTGTGAGGAGGATTCACGGGAGAGATGTGTGAGTGACAGAGAAGTGAAGTAATGGAGATGTAGCCTAATGTGTTGTGCTACTAAAGTATGTGCTGCTGCAACTTGGAATGATTCAACTCTAAAAAATATCTTGATTGTAACCTGACTTTTTATCATCGAAATCCACGGGCTCTCGGACAAGGTGATAGATAGTTAAGTAACATAGTTAGGGTACATTTAATACTCTAAGTAAAATAAGCCCTGTTCGAGCCAGAATGGCCCATATGGGCAGGAGCCtaactcctgtttctgtagtgtgaggcagcttgatgtacaagtacaccccctggacaggaagcTAGTCTGCCACAGGGCCTTTAGTACTCTATTGCAGGCCTGAAAGATGCACGTCTTAACAATATCAGCACAGTTGTCTGAAGTCAACTTCAACAAGCATAACATACTAGTCAACTAATATCTACAAAAACATGAAGAAGTGTTCATATCTTTATCCAATGATTCAGTAAATAACTTACTCAAATCCTTTTATTTCAAATAGAAAATAGCCTCTTTCCGTAACTAGAATTGATACATGCTCATCATACCATTATCTAGTGCTTGCAGTAATGCAATTGTTGCAATAAGTTAAACTTAAAGgacttttttttctcacttttttTAAATCGTTTTTTGAAGAGATGTTGTTGCTGACAAAGAGCTcgcatatatactgtatatatatatatacagtaccagtcaaaagtttggacacaccaactcatttaagtttgaattttttaaaaactattttctacatgttagaatattagtgaagacatcaaaactatgaaataacacacatggaatcacgtagtaaccaaaacagtgttaaaagcaaatcagaatatattttagatttgagattcttcaaagtagccaccttttgccttaatgacagctttgcaccctcttggcattctctcaaccagattaatctggaatgcttttccaacagtcttgaaggagttccaacatatgctgagcacttgttggctgcctttccttcactctgcggtccaactcatcccaaaccatctcatccttcttggtcaaattgcccttacacagcatggaggtgtgttttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcacagaccagatgggatggagtattgctgcagaatgctgtggtagccatgctggttaagtgtgccttcaattgtaaataaatcacagacagtgtcaccagcaaagcacccccacacctcacacctcctcctccatgctttacggtgggaaccacacacatggagatcatccgttcacctactgccatgtctcacaaagacatggcagttggaaccaaaaatctcaaatttggattcatcaggacaaaggacagatttccacaagtctaatgttcattgctcatgtttcttggcccaatcaagttttttctctctttaatggtgtcctttagtagaggtttctctaaagcaattcaaccatgaaggcctgattcacacagtcaacTCTGAACAGTAGATGTTGAGATGTATCAttaacttgaactctgtgaagcatttatttgggctgtaatttctgaagctggtaactctaatgaactctgcagcagaggtaactctgggtcttccattcctgtggcggtccttgtTAGAGCAGGTTTCATCATagaacttgatggtttttgcgactgcacttgaagaaactttcaaagttcttgaaatcttccggattgactgaccttcatgtcttaaagtaatgatggactgtcatttctcttagcttatttgatctgttattgacataatatggacttggtcttttgccacccctgccttgtcacaacacaaacgcattaagaaggaaagaaattccacaaattaggcacacctgttaattggcacacctgttaattggcacacctgttaattggcacacctgttaattggcacacctgtaaattgaaatgcattcctggtgactacctcatgaagctggttaaaaTAATGCCaaatgtgtgcaaagctgtcatctagacaaagggtggctactttgaagaatctcaaatataaaatacatttttgaaacactttcttggttatatggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318829 lncRNA upstream 24806 60262368 ~ 60262582 (+) True G281128
TU318782 lncRNA upstream 71276 60215884 ~ 60216112 (+) True G281082
TU318754 lncRNA upstream 118946 60168239 ~ 60168442 (+) True G281054
TU318746 lncRNA upstream 121240 60164479 ~ 60166148 (+) False G281052
TU318750 lncRNA upstream 121240 60164628 ~ 60166148 (+) True G281052
TU318846 lncRNA downstream 115 60290682 ~ 60292657 (+) False G281142
TU318847 lncRNA downstream 115 60290682 ~ 60292657 (+) True G281142
TU318872 lncRNA downstream 31586 60322153 ~ 60323132 (+) True G281166
TU318906 lncRNA downstream 88641 60379208 ~ 60379424 (+) True G281197
TU318918 lncRNA downstream 98582 60389149 ~ 60389407 (+) True G281200
XM_021581343.1 mRNA upstream 1308 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 1311 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 17489 60267642 ~ 60269899 (+) True LOC110505381
XM_036974796.1 mRNA upstream 235094 59870559 ~ 60052294 (+) True erbb4b
XM_021597499.2 mRNA upstream 705432 59556678 ~ 59581956 (+) False ikzf2
XR_005051347.1 mRNA downstream 92107 60382674 ~ 60383352 (+) True LOC118964303
XM_021597524.2 mRNA downstream 343972 60634539 ~ 60654313 (+) True tgfbr2l
XM_036974822.1 mRNA downstream 1040792 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 1040976 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 1185309 61475876 ~ 61505428 (+) True LOC110520316
TU317976 other upstream 232971 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 232971 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2497056 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 3022496 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 4371255 55915329 ~ 55916133 (+) False G275553
TU319365 other downstream 449672 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 600957 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 600957 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 743199 61033766 ~ 61037105 (+) True G281996
TU320641 other downstream 1666821 61957388 ~ 61961475 (+) True G282707

Expression Profile