RNA id: TU320646



Basic Information


Item Value
RNA id TU320646
length 310
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G282712
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61982071 ~ 61982481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgatatAGTGACCAGGACGTTGAGTCCCTCTAGTACGTCCATCTGTTGGAAGCGGCGTCGGCTGATTAGGGGGTAGACCTTCCCCTGACCACTACGGTCCAGCAGCATCAGACCACTCTCTGTGCCCACCAGGAGGtTCACCCCAGAGTGCTGCACACAGGATCTCAGAGTTAAACCTCTTCTTATACTTGCGGATCTCTGGGGTGTCGCTTTGTGGTCGTGTGTTGACAGGGTTCACATTGACCACGGAGCCTTTACGTGACGGGTCCGCCCTCAGTGCCTCTGCCAGCCTGGCGTCGTTCCCAAAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU320640 lncRNA upstream 18005 61957388 ~ 61964066 (+) False G282707
TU320587 lncRNA upstream 132397 61845290 ~ 61849674 (+) True G282658
TU320559 lncRNA upstream 138242 61841813 ~ 61843829 (+) True G282634
TU320481 lncRNA upstream 283688 61693535 ~ 61698383 (+) True G282560
TU320459 lncRNA upstream 327874 61653550 ~ 61654197 (+) True G282538
TU320677 lncRNA downstream 20186 62002667 ~ 62003022 (+) True G282725
TU320695 lncRNA downstream 130579 62113060 ~ 62161959 (+) False G282743
TU320696 lncRNA downstream 130825 62113306 ~ 62161959 (+) True G282743
TU320770 lncRNA downstream 130972 62113453 ~ 62121013 (+) True G282805
TU320759 lncRNA downstream 140314 62122795 ~ 62125063 (+) True LOC110520332
XM_021597566.2 mRNA upstream 140865 61836665 ~ 61841206 (+) False LOC110520325
XM_021597567.2 mRNA upstream 140865 61836666 ~ 61841206 (+) False LOC110520325
XM_021597568.2 mRNA upstream 140865 61836666 ~ 61841206 (+) True LOC110520325
XM_036974832.1 mRNA upstream 149658 61773435 ~ 61832413 (+) False LOC110520324
XM_021597580.2 mRNA downstream 138718 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA downstream 138729 62121210 ~ 62125952 (+) False LOC110520332
XM_021597579.2 mRNA downstream 138737 62121218 ~ 62126483 (+) False LOC110520332
XM_036974863.1 mRNA downstream 146553 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA downstream 148368 62130849 ~ 62156042 (+) False LOC110520333
TU320641 other upstream 20596 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 944966 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1088293 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1088293 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1224721 60740239 ~ 60757350 (+) True G281591
TU320785 other downstream 211123 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 385133 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 723850 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1033845 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 1143409 63125890 ~ 63128958 (+) True LOC110520364

Expression Profile