RNA id: TU320782



Basic Information


Item Value
RNA id TU320782
length 269
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G282815
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62164883 ~ 62174362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCCAGACAGTGTACTCACACGCCATGTATGCGCTTGTGGATGTTGACGGTGTACTCCCTGGTCACAACCTCGTTGATGGCAGAACGCCCCTTCTTTTTCTCACCGCCCTTCTTGTTTGGCGCCATCTCACATGgacgcctcttcctctctctttgttCAGGCCGTTTAAAACATGGTCAGTTCCGGTCTACTTGACGGTGGCTCTCCCATAGAAACCAATGCGATAGAAACTGCGTCTGGTCTGCTTTGTTTATCGACTTGTATATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU320695 lncRNA upstream 6193 62113060 ~ 62161959 (+) False G282743
TU320696 lncRNA upstream 6193 62113306 ~ 62161959 (+) True G282743
TU320751 lncRNA upstream 38040 62126644 ~ 62130112 (+) True G282786
TU320759 lncRNA upstream 43089 62122795 ~ 62125063 (+) True LOC110520332
TU320770 lncRNA upstream 47139 62113453 ~ 62121013 (+) True G282805
TU320878 lncRNA downstream 129121 62303483 ~ 62320393 (+) True G282907
TU320950 lncRNA downstream 234861 62409223 ~ 62409441 (+) True G282976
TU321741 lncRNA downstream 249052 62423414 ~ 62425547 (+) False LOC110520349
TU321739 lncRNA downstream 251331 62425693 ~ 62430935 (+) True LOC110520349
TU321806 lncRNA downstream 342439 62516801 ~ 62518422 (+) True G283779
XM_036974863.1 mRNA upstream 12110 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA upstream 12110 62130849 ~ 62156042 (+) False LOC110520333
XM_021597582.2 mRNA upstream 12110 62130849 ~ 62156042 (+) False LOC110520333
XM_021597583.2 mRNA upstream 12110 62130849 ~ 62156042 (+) True LOC110520333
XM_021597579.2 mRNA upstream 41669 62121218 ~ 62126483 (+) False LOC110520332
XM_021597592.2 mRNA downstream 223 62174585 ~ 62180282 (+) False cnot11
XM_021597593.2 mRNA downstream 224 62174586 ~ 62180282 (+) True cnot11
XM_021597594.2 mRNA downstream 18925 62193287 ~ 62200069 (+) False LOC110520339
XM_021597595.2 mRNA downstream 19248 62193610 ~ 62200069 (+) False LOC110520339
XM_021597596.2 mRNA downstream 26469 62200831 ~ 62203750 (+) True LOC110520341
TU320641 other upstream 206677 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1131047 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1274374 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1274374 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1410802 60740239 ~ 60757350 (+) True G281591
TU320785 other downstream 19242 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 193252 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 531969 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 841964 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 951528 63125890 ~ 63128958 (+) True LOC110520364

Expression Profile