RNA id: TU320878


Basic Information

Item Value
RNA id TU320878
length 232
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G282907
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62303483 ~ 62320393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcaaaggattagcatttcaattaatataattatcaactgtttGTGTGAATCtattttgtctttcccactctttctcagtccccagaactttcctttgtctaccaagccgtcatatcagcTTTGTCGGCTAGGGACTTTTTCTTTGTATCACGTAGGAACCCAAATATcttctgtttgtttgttattgtcacgccctgatttgtttcacctgtccttgtgattgtctccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320783 lncRNA upstream 129121 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA upstream 129121 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA upstream 131591 62169746 ~ 62171892 (+) True G282822
TU320695 lncRNA upstream 141524 62113060 ~ 62161959 (+) False G282743
TU320696 lncRNA upstream 141524 62113306 ~ 62161959 (+) True G282743
TU320950 lncRNA downstream 88830 62409223 ~ 62409441 (+) True G282976
TU321741 lncRNA downstream 103021 62423414 ~ 62425547 (+) False LOC110520349
TU321739 lncRNA downstream 105300 62425693 ~ 62430935 (+) True LOC110520349
TU321806 lncRNA downstream 196408 62516801 ~ 62518422 (+) True G283779
TU321835 lncRNA downstream 256090 62576483 ~ 62577684 (+) True G283802
XR_002472968.2 mRNA upstream 16665 62281719 ~ 62286818 (+) True LOC110520345
XM_021597600.2 mRNA upstream 30654 62254960 ~ 62272829 (+) True LOC110520344
XM_021597598.2 mRNA upstream 48672 62249459 ~ 62254811 (+) True med4
XM_021597596.2 mRNA upstream 99733 62200831 ~ 62203750 (+) True LOC110520341
XM_021597594.2 mRNA upstream 103414 62193287 ~ 62200069 (+) False LOC110520339
XM_021597601.2 mRNA downstream 47096 62367489 ~ 62406396 (+) False LOC110520346
XR_002472969.2 mRNA downstream 103027 62423420 ~ 62426300 (+) False LOC110520349
XM_021597610.2 mRNA downstream 214253 62534646 ~ 62542031 (+) False rubcnl
XM_021597609.2 mRNA downstream 214254 62534647 ~ 62542031 (+) True rubcnl
XM_021597612.2 mRNA downstream 223184 62543577 ~ 62547782 (+) True dhrs12
TU320785 other upstream 106532 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 342008 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1266378 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1409705 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1409705 60891524 ~ 60893778 (+) True G281714
TU320883 other downstream 47221 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 385938 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 695933 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 805497 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 946726 63267119 ~ 63312394 (+) False G284537

Expression Profile