RNA id: TU322403



Basic Information


Item Value
RNA id TU322403
length 502
lncRNA type read_through
GC content 0.43
exon number 2
gene id G284291
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62971484 ~ 63020713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGAGACAGCTTAGAAACAACCACCACCACTGTTGATTAGAATAATTACGGTACCAGTCTGTGAGTCTTCATCAGGGAGTATGTGTAGGTTTAGGGCTGCATTAGTTACAATCACAGTTAACACAGTAATAACACTAGTAGTTAGTACCCACCATTCCCAGTGGAAATGCCATATACACACCTTGGCTGGCTTGGAGGTGGCTTTTTTCTCAGGTTTGGACTCAATGGCCTTCTGACAAacgttctctctccccttctgtgcCATGGAGTATTCATACttcctctagagagagagagaaaatcacaTGTAAATGAACAGACACTATGTATAGGGGTTGAGGGTCTAAATAACACAGGTCTATTTAGCTTGTTGTGTGTCTTCCTACCTGAAGGTTCTCTAGCCGAGCCTGGACCTTCCTGAACTGGTTCTCCAGACGCTTGTTCTGCTCACTCAGCTCATTCAGCTGAACACAATACAATGATATAATACAAACAGTTAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322294 lncRNA upstream 35387 62933377 ~ 62936097 (+) True G284206
TU322286 lncRNA upstream 52246 62918481 ~ 62919238 (+) True G284198
TU322251 lncRNA upstream 107756 62862746 ~ 62863728 (+) True G284174
TU322165 lncRNA upstream 139070 62832079 ~ 62832414 (+) True G284096
TU322164 lncRNA upstream 139847 62831419 ~ 62831637 (+) True G284095
TU322466 lncRNA downstream 46236 63066949 ~ 63067154 (+) True G284345
TU322467 lncRNA downstream 46512 63067225 ~ 63067470 (+) True G284346
TU322476 lncRNA downstream 55035 63075748 ~ 63076164 (+) True G284355
TU322487 lncRNA downstream 76273 63096986 ~ 63097218 (+) True G284366
TU322475 lncRNA downstream 104095 63124808 ~ 63125815 (+) False LOC110520364
XR_005051352.1 mRNA upstream 110986 62858213 ~ 62860498 (+) True LOC118964307
XM_021597616.2 mRNA upstream 158403 62783246 ~ 62813081 (+) False LOC110520355
XM_036965040.1 mRNA upstream 258744 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 270271 62698887 ~ 62701213 (+) True LOC118964306
XM_036974880.1 mRNA upstream 324532 62623416 ~ 62646952 (+) True LOC110520352
XR_002472972.2 mRNA downstream 92954 63113667 ~ 63119407 (+) True LOC110520363
XM_021597625.2 mRNA downstream 103667 63124380 ~ 63129015 (+) False LOC110520364
XM_021597627.2 mRNA downstream 152523 63173236 ~ 63204595 (+) False LOC110520366
XM_021597626.2 mRNA downstream 152530 63173243 ~ 63204595 (+) False LOC110520366
XM_021597628.2 mRNA downstream 152530 63173243 ~ 63204595 (+) False LOC110520366
TU321897 other upstream 264514 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 562627 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 774533 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 1010009 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1934379 61033766 ~ 61037105 (+) True G281996
TU322474 other downstream 105177 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 246406 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 370218 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 685855 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 722293 63743006 ~ 63745493 (+) False G285001

Expression Profile