RNA id: TU324194



Basic Information


Item Value
RNA id TU324194
length 335
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G285943
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64502505 ~ 64503428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTGGCTGTGATCTTCAGGCTCCCAGGGTTGCGAATGAGTTTATCCAGGATGCTGACGATCTGTTCGAACTTGGGTCTGTTGTTCCTCTCCTTCTGCCAGCAGTCCAACATCAGCTGGTACAGAGTAGCAGGACAGTCCATAGGAGGAGGCAGTCTGTAGCCCTCATCTACTGCTTTGATAACGTCCTGATTGGACATCTCCCAGTAAGGCCGCTCCCCGTATGACATCACTTCCCAGAGCACGATGCCGTAGCTCCAGGCGTCGCTGGCCGAGGTGAACTTCCTGTAGGAGATAGCTTCTGGAGCTGTCCACCTGATAGGGATCTTACctccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324186 lncRNA upstream 10872 64491368 ~ 64491633 (+) True G285936
TU324182 lncRNA upstream 18310 64483819 ~ 64484195 (+) True G285932
TU324170 lncRNA upstream 43690 64458570 ~ 64458815 (+) True G285920
TU324162 lncRNA upstream 55857 64446320 ~ 64446648 (+) True G285912
TU324157 lncRNA upstream 62619 64439687 ~ 64439886 (+) True G285907
TU324205 lncRNA downstream 21531 64524959 ~ 64525243 (+) True G285954
TU324219 lncRNA downstream 46099 64549527 ~ 64549841 (+) False G285968
TU324222 lncRNA downstream 46099 64549527 ~ 64549951 (+) True G285968
TU324223 lncRNA downstream 47876 64551304 ~ 64551518 (+) True G285969
TU324231 lncRNA downstream 78651 64582079 ~ 64582302 (+) True G285977
XM_021597662.2 mRNA upstream 119714 64380591 ~ 64382791 (+) True LOC110520382
XM_021597663.2 mRNA upstream 528029 63972679 ~ 63974476 (+) True LOC110520383
XM_021583204.2 mRNA upstream 602312 63894665 ~ 63900193 (+) True LOC110504443
XR_005039920.1 mRNA upstream 613294 63888258 ~ 63889211 (+) True LOC118944562
XM_021597640.2 mRNA upstream 820263 63626178 ~ 63682242 (+) True gtf2f2b
XM_036974921.1 mRNA downstream 351312 64854740 ~ 64861974 (+) False zgc:152951
XM_036974919.1 mRNA downstream 351314 64854742 ~ 64861974 (+) False zgc:152951
XM_021597671.2 mRNA downstream 351471 64854899 ~ 64861974 (+) False zgc:152951
XM_036974920.1 mRNA downstream 351802 64855230 ~ 64861974 (+) False zgc:152951
XM_021597670.2 mRNA downstream 352430 64855858 ~ 64861974 (+) True zgc:152951
TU324010 other upstream 195145 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 418523 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 757012 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 757012 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 780441 63706568 ~ 63722064 (+) False G284986
TU325026 other downstream 605828 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 657963 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 757017 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1530992 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 2046394 66549822 ~ 66550487 (+) True G288252

Expression Profile