RNA id: TU341438


Basic Information

Item Value
RNA id TU341438
length 393
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G300967
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78857899 ~ 78858291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgaaTTTAAGCCAAATATAACGTTTTgcgttgttgccaaaaagttcaattttggtttcatctgaccagagcaccgtcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatgtctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341431 lncRNA downstream 5441 78852192 ~ 78852458 (-) True G300960
TU341398 lncRNA downstream 31617 78826034 ~ 78826282 (-) True G300931
TU341354 lncRNA downstream 74214 78783474 ~ 78783685 (-) True G300887
TU341336 lncRNA downstream 95488 78762149 ~ 78762411 (-) True G300872
TU341326 lncRNA downstream 102889 78754794 ~ 78755010 (-) True G300862
TU341443 lncRNA upstream 6826 78865117 ~ 78865353 (-) True G300972
TU341452 lncRNA upstream 15686 78873977 ~ 78874214 (-) True G300981
TU341477 lncRNA upstream 40893 78899184 ~ 78899493 (-) True G301006
TU341486 lncRNA upstream 49901 78908192 ~ 78908578 (-) True G301015
TU341530 lncRNA upstream 90812 78949103 ~ 78949448 (-) True G301052
XM_036975290.1 mRNA downstream 616715 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 1114338 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 1149594 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 1450128 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 1450130 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 1558658 80416949 ~ 80421159 (-) False LOC110520645
TU340859 other downstream 563679 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 822881 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 874695 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 1007133 77844667 ~ 77850766 (-) False LOC110520626
TU341782 other upstream 245058 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 245058 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 363807 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 591797 79450088 ~ 79450472 (-) True G301452
TU341971 other upstream 592417 79450708 ~ 79450970 (-) True G301453

Expression Profile