RNA id: XM_036976235.1


Basic Information

Item Value
RNA id XM_036976235.1
length 3312
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110522591
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38890314 ~ 38897681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACCGTGTGACTGGGTGACATCTAGCGGCAGAGACACGGTACTGCAGCGTGTCATTGAAAAGCCGAGAGAAAACGGGCTCCATTTTGTGTCCTCCTCGCAGTAAAAGCAGCAAGACAATCCCTCCGAAGGAAGgaaaaaacccaacacaaaagACATATTTTACAGGCAGAATGAGTGGCTGCCGCATATTTGTGGGCCGGTTGAACCCGTCCGCCAGAGAGAAGGACGTGGAGAGATTCTTCAAAGGATACGGCCGCATCCGAGACATCGACCTCAAGAGGGGCTTTGGTTTTGTgGAGTTTGATGATCCTAGGGATGCTGAGGATGCAGTTTATGAGTTGGACGGCAAGGAGCTCTGCAATGAGAGggtgacCATTGAGCATGCTCGTGTGCGCCTGCGTGGTGGGCGAGGACGTGGTGgtgacagagggggaggaggaggaggaggaggaggaggccgcTTCCCAGATCGCTATGGCCGTGGCTCCCAGGATAGTCGGAGGACCAACCAACCAAGTGGACCACCGGCAGATAGGAACCCCCCACCGATGCGCACGGAGAACCGTCTCATCGTGGAGAACCTGTCATCTCGCGTCAGCTGGCAGGACCTGAAGGATTTCATGAGACAGGCTGGGGAAGTCACCTTTGCAGACGCACACCGCCCCAAGCTCAACGAAGGAGTGGTTGAGTTCGCTTCTTACAGCGACCTGAAAAACGCCCTTGAGAAGCTGTCTGGCAAGGAGATCAATGGAAGGAAAATCAAACTGATCGAGGCAGCTAAGAAGAGgGGTTCAAGGAGTCGTTCCCGCTCTGAGAGCTCTTCTCGTTCTCGCTCCCGTTCTCGTAACCGTTCCCCGTCCCGCTCCAGGACCCCTCGTCGTTCCAGGTCCCACTCCCCCAAAGCCCGCTCCCCCAAGAGGGACTACAAACGCTCTCGTTCTCGTTCCCACAGCGGCTCCCCAGCGCCCCGTGCTGCTGCCCCTGGCTCCCCACCCCCGAGGGCCAAAgagacctcttcctcctcctctaaacGACCCTCTAAGCCCAGCAAGTCTGCCTCCCCCAACTCCACTCCCCCTGCACAGCGTGCACCTTCCAGGTCTCCTTCCAGGTCTCGTGGCTCTCGCTCCCCGTCTACGGACAGCCGCCACTGAGAACACCTAGCGCAGGAGTATACACGTTttaaaataaacacacacctcgTACATAAATACTCACATTCAGACAAAACAGGACAGGGCAGGAACTGTTTTACCCAGCGGTTCTTGCCTGGTGTCCCTGTATTTCCCCCTCCGTTTCCTCCCTCCGCTCTTCTCTTCTGACATAGCTGATCTTTGACCTACTTTTGTATGGTCAGTGTTCTCAGTAAAAGCGTGGCTCTTGCTGTGAACACAACGAGGGCTTCGTTTTCAATTTGAGCATCAAGTCTAAAACCTTCTGGGGGTTTTGGTtagtatttttatttgtaataatggatGTAATTCTTGGTaaggtattacattttttttattttttatcattcAACACTCGTGtggtggaccccccccctctaccggCTTTTGTTTGTCAGCTCTGATATCATGAGCTGTTGAGAATTCAAGTCCCGTTCCATGATGGCTATGAATGTGATTGGCTAAGGTTTTGGGTCGAACCATTCTGATCTCAGTGTAGggttctttttttgggggggatttgaTTAGTTTTATGCTGTGATTTATTTGATTGAACGCCATTcttctttttttggggggtgtaTCAGATTGTGatctTTTTTTTTTGTGGCGGCAATAAAGGTCCTCGTTTTAAGACGTCTGGTGAAAACATTGTGGCAGGCTGCGTTATTATTTCACCCGTTTTGTTTTGACCGTTTTACCGGAGTGGTTGTCTGTGTCTGTACTCTTTTGTTTCTATAAAGCATTATACACGTTTCCTTTCACAAGGTATTGTAATGAAGCGTCGACACAACCTAGAGAATAGTTTGGAAAGTAACAATTTTTAATGCTAAATGAAgtcgtttttgtttgtttttgtttttttttctctctccgtgttCAATATGAGGGTTGTAATTTGTACTTAATTGAAAAAAGAACAAGACACAGCAAACGACAAATGAAAACAGTTTTAAATAAAGCGCCCAGGGCATTTTGTATGTCAGAACTTGAGAATAAAGTGAAACTTCCACAAAGAGTTGTTTGCCACTGTTTGTAAAAATGTTCTTAGTCGTGGATTTAGATTTAGATTTTATTGTTTGAAACATTCAGTATTAAAACGTCACTTATTACAATGTTTTCTATAGCTTGTACACACAGACCTACTGCACTAGCTTGCCTTGATCATAAATACACGTGTAGTACAGACAGTACGTACTTATAATTACCAATTTCATTCCGGAAATGTGTCATACGGTAGTCAATTGGCGCAATCGCTCCACCTGTTCAAAACGACAGTAGCCGTGCCTCACCATCAATGCGAGACACCGATTTGTAAATGCAGTTACTGGGGGGTGTTTTCAAGTCGACTGTACTTATCGTAATGGTTCATGGTAAATCATCAGACTGATGTGATTGTTTCTGGATGCTCGAGAGAAATACTGATCATTCGGAGAGAGATACTGATCATTTGGAGCTTCCGGAACATTCTGTGACCGTTAGGGATCCCTGTCAGTTCAGCCGATGCAGCAGCCACTCTGCCTGGGCTACAAAAATGACTTGcatgataaaacagtacatcatagtTACATTCTGCATtgtacaacaatattacaatgtgtgtgtgtgtgtgcttgtgtctgtacctttgtgtgtgtctcttcacagtccccgctgttctacaagatgtatttttatctgtttttaaatctaattttactgtttgcatcagttacctgatgtggaatagagttccatgtagtcatggctctatgtaggactgtgcacctcccatagtctgttctggacttggggactgtgaagagacctctggtggcatgtcttgtggggtatgtatgggtgtcagagccgtgtgccagtagtttagacagacaacTTCTAGCCTTGATTTTTCACTCTTGATACCATATCTACAGTCTTTCACCTTTTAATGTGTATAGTGTTACATACTAGGTGTTGTCCAATGAATTCCTGTAATCACTCCGGCTTCAAATCAGGGTTGATTGagaaaagctgttcaaaagaggatAATGCATAtctttgtactccctgacgaaggccatgcagccaaATTGTGTCAAGTTTTTCAGTCTTTGTTTCCACTGATCATGCCAttcaaataaaggcattttaagtAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396334 lncRNA upstream 7890 38880676 ~ 38882424 (+) True G350253
TU396330 lncRNA upstream 19321 38870709 ~ 38870993 (+) True G350249
TU396325 lncRNA upstream 27448 38862473 ~ 38862866 (+) True G350244
TU396283 lncRNA upstream 69806 38818227 ~ 38820508 (+) True LOC110522590
TU396289 lncRNA upstream 72926 38816347 ~ 38817388 (+) True G350210
TU396295 lncRNA downstream 754 38898435 ~ 38900534 (+) True LOC118964476
TU396287 lncRNA downstream 3427 38901108 ~ 38901586 (+) True G350208
TU396337 lncRNA downstream 7288 38904969 ~ 38905190 (+) True G350255
TU396342 lncRNA downstream 14171 38911852 ~ 38912080 (+) True G350260
TU396349 lncRNA downstream 41332 38939013 ~ 38940316 (+) True G350266
XR_005051532.1 mRNA upstream 4542 38825783 ~ 38885772 (+) False LOC118964474
XM_036976233.1 mRNA upstream 4542 38825789 ~ 38885772 (+) True LOC118964474
XR_002473345.2 mRNA upstream 69790 38817900 ~ 38820524 (+) False LOC110522590
XM_036976230.1 mRNA upstream 239252 38626216 ~ 38651062 (+) True thbs1b
XM_036976229.1 mRNA upstream 239842 38626216 ~ 38650472 (+) False thbs1b
XR_005051533.1 mRNA downstream 1723 38899404 ~ 38899876 (+) False LOC118964476
XM_021601044.2 mRNA downstream 23657 38921338 ~ 38942012 (+) False LOC110522592
XM_021601045.2 mRNA downstream 23657 38921338 ~ 38942012 (+) False LOC110522592
XM_021601048.2 mRNA downstream 23657 38921338 ~ 38942012 (+) False LOC110522592
XM_021601049.2 mRNA downstream 23657 38921338 ~ 38942012 (+) False LOC110522592
TU395908 other upstream 456290 38432179 ~ 38434024 (+) True G349877
TU395886 other upstream 484850 38404645 ~ 38405464 (+) True G349855
TU394044 other upstream 1393308 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1729191 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2817358 36039166 ~ 36072956 (+) True LOC110522562
TU396290 other downstream 6049 38903730 ~ 38904774 (+) True G350211
TU396861 other downstream 490460 39388141 ~ 39389435 (+) False G350665
TU396863 other downstream 490908 39388589 ~ 39389474 (+) True G350665
TU397710 other downstream 1237006 40134687 ~ 40136773 (+) False G351441
TU397708 other downstream 1237285 40134966 ~ 40136773 (+) True G351441

Expression Profile