RNA id: XM_036976263.1


Basic Information

Item Value
RNA id XM_036976263.1
length 4045
RNA type mRNA
GC content 0.50
exon number 16
gene id vps18
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39528427 ~ 39562620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCAAGATCACCTGACTACACACGGGTCCTTTCCCTTTTTTTGTGCGTTTGGAAGTTTTCGGGGAAGTTGCACACAATTAGCATGTTTTGACAGTTTTTTATATGGCTAAGATAATGCCGTTTTCTATCATGTAGAGTACGCTTCAGTTCTGAATCCTTTCTGACGAGACGCACGCAACAGAATGGGCTCTTTGTAGACTCCAGAAATCTAGCGGTACCTTGTTAGCTCATAGCCAGTCATTATGCCACCGCATGATCCGACCTTGTAGCAGTTAGCTGTTAGTTAGTTCCTCTGCTGTAGATCACCGCTACGTTTTGCAATGTCTTCTATCCTGGATGAATACGAAGACTCGCAGAACAGCAGGCACCCTGTGCAACATAGTAGCCGTCTGTCTGCTGCCAACATCGGCATAACGCATTCAGGGTTTGTGAATGTGAGACTCGAAGAGGAGAAGCCGATATTCAACAAACAGAGGATTGATTTCTCACCCCCGGAGAAGATCAACCACTTTGCTGTCTGTAACAATCAGCTATGCATGAGTTTAGGGAAGGACACTCTCCTGAGGATTGACCTTGCCAAGCCAGACCAGCCCAACCAGATAGAACTGGGGAGGAAGGATGACAGCAGAGTACACAAGCTCTTCCTGGACCCCACAGGGTCCCACCTGGTGATTTCTCTCAGTACCAGCGAGTGTCTGTATCTGAACAGGAACACCCAGAAGGTGAGGTCTCTGTCCCGCTGGAGAGGGCACCTCATAGAGAGTGTAGGCTGGAACAAGCTGCTGGGGACAGAGACCAACACTGGGCCCATCCTAGTGGGAACCAGCCAGGGAATCATCTTCGAGGCTGAGATCTCTGCTTCAGAGGGAAGCCTGTTTAACACCAACCCTGACCAGTACTTCAAacagGTCCACTCCCTGGAGGAGGACGGGAAGCCTGCTCCTGTATGCTgtatagaggtggagagaggtccGGAGTCTAAAGTCGTCATCATCGCCACCACCAGGAAGCGTCTGTTCCAGTTCGTAGGTCGTGTGGCGGAGGGGTCCGAGCAGCAAGGCTTCAGCTCCGTCTTCTCTCAGAACCAGGAGCTGCTGCCCAGCTTCCAGGAGTTTCCGTTTAACATGGGCTACAGTGAGATCACCTTCTACACCTCCAAGCTCAGGTCCTGCCCCAAGGCCTTCGCATGGATGATGGGTAATGGAGTTCTCTACGGTCAGCTGGACTACATCAGGCCGGACTCGGTGCTCAGTGATGTGCAGgtGTGGGATTATACCCCAGACATAGACTTCAGTTTCAACAAGCCCATCTCTATCGTGTTGACTCAGTTCCACTTTCTACTCCTCCTCCCTGACCGCGTCAAGGCCATCTGCACCCTCAACGGACAGgtgGTGTACGAGGATGTGTTTCCTGATAAGTTCGGCACTCTGAAGAAGATGATCAAAGACCTAGCAGGAGGCCTGGTGTGGATCTATACTGAGAAGGCTGTCTTCAGATACCACATCCAGAGAGAAGCCAGGGATGTGTGGCAGATGTACATGAGCATGAACAAGTTTGACCTGGCTAAGGAGTACTGCCGGGACCGGCCAGAGTGCATGGACATGGTCCTGGCTAAGGAGGCAGAACACTGCTTCCAGAACAAACGCTACTTGGAGAGCGCTAAATGCTACGCTCTGACCCAGAACTACTTCGAAGAGATTGCTTTGAAGTTTATCGAGGCAAAACAGGACGAGGCTCTGAAAGAGTTCCTGCTGAAGAAACTCAATAATTTAAAACAGAGTGAGAAGACCCAGATCACCCTACTGGTCACTTGGCTGACTGAGCTTTACCTGAACCACCTGGGGCTTCTAGAATCAGACGAGGGGAAACATGGGGTGTTCCAGGAGACGCGTGATGAGTTCCGGAAGTTCCTCAGTAGTTCCAAACACAAGGAGTGTCTCTATAACAACCGAACGACCATCTATGACCTGCTGGCTAGCCACGGCAACGTGGACGACATGGTCTACTTCTCTGTCATCATGCAGGACTATGAGAGGGTGATCTCCCACCACTGTCAGCATGATGACTATAGCGCCGCCCTGGAGGTGCTCTCGAAGCACTGCGACGAGAAGCTCTTCTATAAGTTCTCCCCCATCCTCATGCAACACATACCTAAGAAGGTGGTGGACGCCTGGATCCAGATGGGTTCCAGGCTGGAACCTAAGAAGCTGATCCCAGCCCTGGTCAACTACAGTCAGATGGGTTCAACACAACAGGTCAACGAGACCATCCGGTACATGGAGTTCTGTGTCTACCAGCTCACTGTGACAGAAGAGGCCATACACAACTACCTGCTGTCCCTCTACGCCAAGTACAAACCTGATAGTCTGTTGTGGTACCTGGAACAGGCTGGTACCCACGCGTCATACATCCACTATGACTTAAAGTACACGCTGAGGCTGTGTGCTGAACATGGTTACCTCCAGGCCTGCGTTCTGGTCTATAAGATCATGGAGCTGTATGAGGAAGCTGTCGATCTGGCCCTACAAGTGGATGTGGACCTGGCCAAGTCATGTGCTGACCTGCCTGAGGATGACGAGGAGTTGAGGAAGAAGTTGTGGCTGAAGATCGCTCGTCACGTGGTGCAAGAGGAGAAGGATGTGAAGAAGGCCATGAACTGTCTGTCCAGCTGTAACCTGCTCAAGATCGAAGACATACTGCCCTTCTTCCCGGACTTCGTCACCATAGACCACTTCAAGGAGGCTATCTGCAGCTCTTTACAGGAGTACAACCAGCATATAGACGAGCTGAAGCAGGAGATGgaggaggcgacggagagcgccaAGCGGATCCGAGAGGACATCCAGGAGATGAGGAACAAGTACGGGGTGGTGGAGAACCAGGAGAAATGTGCTGCCTGTGACTTCCCCCTCCTCAACAGACCCTTCTATCTGTTCCTCTGTGGTCACATGTTCCACTACGACTGCCTCTTCCTGGAGGTGACCCCTCACCTGTCCACCTACAAGCAGACTAAACTAGGTGAGCTGCAGAAGAAGTTGGCTGCAGCCACTCAGACCTCCAAGTCTCGCCACCGCCCTGCCCCcaaggagaaggaggaagggggCGACACCGCCAGCCTGGGCAAAGAGAATGCTGGAGTCAGCCGTGAGCAAATCAAGTCAGACATCGATGACATCATCGCGTTTGAATGCGTGTACTGCGGCGAGCTGATGATCAAGTCGATCGACAAGCCGTTTATTGATCCACAGAAGTTGGAGGAGGAGAAGTCCAGCTGGCTCTGAGTTAAATGGTTGGCAGCTTGGAGCTGAAATGAGCTAGGTCTGAAATGGACTGCCTGATATGAGGTGGGAAAATTTGACTGAAGAAGATCTGAAATTAGTGAAATGTGCTTTAACTGTCTGAACCGATGAGAGGTGAAATAGACTTGTCTGAAATGACTGAAATGCGCAGCGTGTGTTGTCTGAAATGGAACCGACCAGTGTGTACACTGTAGGCCAGAAAATCAGCTGTTATTCTCCTTTGATAATGGGATGTACAGCCACAGCTGCACAGTGCCGGGCGATGGATACTCACAGGAGTGGGGAAGAATGCAGGCGCTCCTATATAAGCCCTATAAGTGTCTCTGTAACATGATATATTCTACAGACTCTCTCTCTGCGAAGCTTAGAAAAACTGCCACTATGTCGGGATCACACACCTTGGGTTTATTAAGCATTACAAGATCGGTTCACTATCTTTTACACTCATCTGTCTAAATTAACAAATTAACTTGTGAAATGTTCTCTGAAATGGAATGCATATTTATACATCTTCACTGGTATTAGTTAGTTCCACTGGCTATTGACATGAATAGTACTATAAAAAGGTATGTAAAGAACTACAGTTTTTGTTATTAgtttcctttatgacatcatgAGAACTTTCTTCACACCTGTTTCATTGGCTGGCAGTTTATTATGTTGTGACATCTGAGATCAGGTCAATGTAACCCACTTTTGGTTTGCAAAATGCACCTATGAAAATTAAACGAATCTTTAATTCTG

Function

GO: NA

KEGG:

id description
K20181 VPS18, PEP3; vacuolar protein sorting-associated protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396943 lncRNA upstream 2464 39523399 ~ 39525963 (+) False G350733
TU396946 lncRNA upstream 2464 39523399 ~ 39525963 (+) False G350733
TU396945 lncRNA upstream 2464 39523817 ~ 39525963 (+) True G350733
TU396909 lncRNA upstream 52739 39475199 ~ 39475688 (+) True G350708
TU396888 lncRNA upstream 85753 39442438 ~ 39442674 (+) True G350688
TU396957 lncRNA downstream 4335 39566955 ~ 39567609 (+) True G350744
TU396978 lncRNA downstream 62289 39624909 ~ 39625264 (+) False G350763
TU396979 lncRNA downstream 62289 39624909 ~ 39625349 (+) True G350763
TU396906 lncRNA downstream 87556 39650176 ~ 39651678 (+) True ino80
TU397000 lncRNA downstream 95843 39658463 ~ 39658882 (+) True G350783
NM_001160586.2 mRNA upstream 50023 39473308 ~ 39478404 (+) True pigh
XM_036976254.1 mRNA upstream 143927 39222711 ~ 39384500 (+) False rgs6
XM_036976245.1 mRNA upstream 341563 39122224 ~ 39186864 (+) False LOC110521105
XM_036976247.1 mRNA upstream 341563 39122224 ~ 39186864 (+) False LOC110521105
XM_036976244.1 mRNA upstream 341564 39122224 ~ 39186863 (+) False LOC110521105
XM_036976258.1 mRNA downstream 959 39563579 ~ 39651706 (+) False ino80
XM_036976261.1 mRNA downstream 959 39563579 ~ 39651706 (+) False ino80
XM_036976262.1 mRNA downstream 960 39563580 ~ 39651706 (+) False ino80
XM_036976260.1 mRNA downstream 1150 39563770 ~ 39651706 (+) False ino80
XM_021601071.2 mRNA downstream 619757 40182377 ~ 40265689 (+) False syndig1l
TU396863 other upstream 138953 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 138992 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 623653 38903730 ~ 38904774 (+) True G350211
TU396268 other upstream 630771 38894143 ~ 38897656 (+) True LOC110522591
TU396263 other upstream 631906 38894143 ~ 38896521 (+) False LOC110522591
TU397710 other downstream 572067 40134687 ~ 40136773 (+) False G351441
TU397708 other downstream 572346 40134966 ~ 40136773 (+) True G351441
TU398718 other downstream 1427539 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 1647627 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 1648493 41211113 ~ 41213949 (+) True G352341

Expression Profile