RNA id: XM_036976260.1


Basic Information

Item Value
RNA id XM_036976260.1
length 7707
RNA type mRNA
GC content 0.51
exon number 36
gene id ino80
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39563579 ~ 39651706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTTCGGAGGTAATATGGTGAGGGAGCAATGGGGTAAAATGGCCGGGAGGGAGAAAGAATTAGATCGCGGGGATCCGAGAACAGAGGCTTCTGACACGACCCTCGTGTCTATTCAAGGAGACGGATAGGCCTTTCACATCTTCTGAACTGACAGTTGTGATTGGAGATAATGAGGATATCCATAGCCCACATTAGAAAGTGAGTATCCCTACCTAGTAGGGCCTACAGGTCTCAGTCCTCCATGGCGTCTGGGGCTGGGCAGGCAGAGGCCGACGATGGGGCAGCATGGTCGTCATCAGGCCTGGCCAAGCCTCTTCACCTTCAGCACCTGGAGAGATCCCTACGCCTTGACAGCTTCCTCCGCCAGACCGCCTCAGTCTTCAACAGAGACCTATCCAGTGACGACAGCGACGATGACGGATTAGGGGAGGGGCCTTCTCTGAGGCCGGTCAATCAGCACGCAGCCTTGGCGATAAAAGAGGAGTCATGTGACCTGGATGAGGAGGGGCTTGTTACCGAGGGCACCATCCTCAACGGAACTCCATCACAAGAACACAAGGAAGACAAAGCCAGTCTATACAACTTCTCCAAACTGAAGAAGAGCAGGAAATGGCTCAAGAGTATCCTGTTGAGCGACGACACCAGTGAGTCAGACACAGAGGACTCTGACTTCAGTCTGTCCAGAGAAGAGCTACAGGACATGCTCAGACTGCACCAGTTCACCAGGGAGCACCAGAACAAGTTCCACAACGACAGAgagctgcAGCAGTATCAGTACTATAGTACGGGACTGCTCTCCTCCCATGACCCTTTCCACGAACAACAGCGCCACCTGCTGGGCCCCAAGAAGAAGAAGATCAAGGAGGAGAAGAAATTCAAGGGCAAGTTGAAGAAGGGCAAGAGGaaaaagaagagaggggagggggagttcTCGGGCGAGGGGCGGCCGCATGTCACCAAGATCTTCGCCAAGTTTTCCCATGACGCCCCTCTTCCCATGTTGAAGAAGAAACACCTGACCGTAGAGCAGCTGAACGCACGACGACGCAAAGTCTGGCTCACCATCGCCAAGAAGGAGTGCCCCAAGGCATTCAAGCAAAAAGCATCAGCCAAGAACTTCGTCCTTACCAATGCCAAAAAGCTGGCCCACCAGTGTCTGCGTGAGGTACGTAGGGCAGCCATCCAAGCCCAGAAGAACTGCAAAGAAACCCTTCCCCGAGCCAGGAGACTGACCAAGGAGATGACGCTCTACTGGAAGAAATATGAGAAGGTGGAGAAGGAACACAggaagagagcagagaaagaggcTCTGGAGCAACGCAAACTGGACGAGGAGCTGAGAGAGgCGAAGCGTCAGCAGCGTAAGCTGAACTTCCTGATCACCCAGACAGAGCTGTACGCCCACTTCATGGGGGGCAAGGGTCCCGGGGAGGAGgacgggggagaggaggacaTTCTCAACAAGCTGGACGACACCAACTCTCACAGGCAGATGACCATCGGGGAAGGGCTGACGGTCAACGTTGGACAGGAGGACTATGATAGTGAATACTACAAGTCTCAGGCCTTAAGGAAAGCTAAAGAAGCCTACGAGATACACCAGGCCAGAACACGTCTCTTTGACGAGGAGGCTAAGGACAGTCGCTGTGCCTCCCTGCACCAGGCCAGTGGGGGGTCGGGGTCAGGGTTCGGGGAGAGCTACAGCCTGTCTAACCCTTCTATCCAGGCCGGAGAGGACATCCCCCAGCCAACCATCTTCAACGGGAAATTGAAGGGATACCAGCTGAAAGGCATGAACTGGCTGGCTAACCTCTACGAACAGgGTATCAATGGTATCCTAGCGGATGAGATGGGCCTGGGGAAGACTGTTCAGAGCATCGCTCTGCTGGGTCACCTGGCTGAGCGTGACAACATCTGGGGTCCGTTCCTCATCATCTCTCCTGCCTCCACACTGAATAACTGGCACCAGGAGTTTACACGCTTTGTCCCCAAATTCAAGGTCCTGCCGTACTGGGGGAACCCTCACGACCGCAAAGTGATCAGGAAGTTCTGGAGCCAGAAAACCCTGTACACCCAGAATGCTCCGTTCCACGTGGTGATCACCAGTTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGAGGGTCAAGTGGCAGTACATGGTTCTAGATGAAGCCCAGGCCCTAAAGAGCAGCACCAGTGTTCGTTGGAAGATCTTGCTGCAGTTTCAGTGTAGAAACAGACTGTTGCTCACTGGAACGcccatacagaacactatggcaGAGTTGTGGGCCCTGCTCCATTTCATCATGCCTACGTTGTTTGACTCTCACGAGGAGTTTAATGAATGGTTCTCTAAAGACATCGAGAGCCATGCAGAGAACAAGTCTGCCATCGACGAGAatCAGCTGTCCAGGCTCCATATGATCCTGAAACCCTTCATGTTGAGGAGGATCAAGAAGGACGTGGAGAACGAGCTCTCtgacaagATTGAGATCCTAACATACTGCCAGTTGACGTGTAGACAGAGGCTGCTCTACAGAGCTCTGAGGAACAAGATCTCCATCGAGGATCTTCTCCAGTCGTCTATGGGCTCATCTCAACAGGCTCACAGTACTACCTCATCCCTTATGAACCTAGTCATGCAGTTCAGAAAGGTCTGTAACCACCCGGACCTGTTTGAGCGCCAGGAGACTCGTTCTCCCTTCCACATGTCACTGAGACCCTACGTCATGTCCAAGTTCCTCTACCGCCACGgactcacacacaccaccacgcacacacacagcaggaacAAgGTGCTCCAGGTTCtactgtctcccttctctcctgatCATATCCACCAGTCCCTCTTCCACAGGAAAGGTGATCAGGAAGGAAGTTGTTTCTCCTTCCTGCGTTTCATCGACGTTTCGCCGGCAGAGATGTTTAACGTCATGCTGCAGGGCACTCTGGTCAGGTGGTtagctctgtttctctccctgaaGGCAGCGTACCGGCTCTACCAGAGACGCATGTGGGgcctggaagaggaggagggtggagggagcgGGAGGCCCAGGAATCAGTGTCTCTCTCGGAGGGGTCTGATCCTCTGGCTGGACCGACCTACTGCTTTCCCCAACACGCACACAAGCTCAGTGTTACAgaacctGGTATTCACCCGTCACAGCCCAGGTCTGATGGGTCACTGTGATGTTCTGGTCCACAGTCGATGCTCTGCCAACTCCACCACCCTACGACCGGGCCAACCCACACAACCACCCAAGTTCCTGCTCACCGCTGTGCCAAGGGTTACGGCGGTTCCCATGGAGCGGTACTGTGACGACCGCAGCGCTGAGTACGAGTGGCAGGAGACGAGGGCCGGAGGGGGCATGGCCGCCAAGCACTGCTTCCTGTACGGCTCCCTTGATCTGGCCTCTGATTGGATGTCCCGAGCCAACACTTTTTACCCACGATGCCCTGGGGGAGTGATGGCGCTCTACCCCCGGCATGGCTGGTCCTACATCAGAATACCAGACAAGGAGACCCTGATCACGGACAGTGGGAAGCTGCACACTCTGGATCTGCTGCTGTGTCGCCTGAAGACTCAGGGACACCGCGTCCTCATCTACTCCCAGATGACTCGCATGATCGACCTGCTGGAGgagTACATGGTGTATCGTAAACACACCTACATGCGTCTGGACGGCTCCTCCAAGATCTCAGAACGCAGAGACATGGTGGCTGACTTCCAGAGCAGGACTGACATCTTTGTGTTCCTCCTGAGTACGAGGGCTGGAGGTCTGGGCATCAACCTGACTGCTGCTGACACTgtGATCTTCTATGACAGTGACTGGAACCCTACAGTGGACCAGCAGGCTATGGACAGAGCTCATCGCCTGGGTCAGACCAAGCAGGTCACTGTGTACCGTCTGATCTGTCAGCTCACTATAGAGGAGAGGATACTGCAGAGGGCCAAGGAGAAGAGTGAGatCCAGAGGATGGTGATCTCTGGGGGGAACTTTAAACCAGACACCCTGAAACCTAAAGAGGTGGTCAGTCTACTGCTGGACGACGAGGAGCTGGAGAAGAGACTGCGCGTTCGTCAGGAAGAGAAGACACAACAGGAGGAGTGCAGCAAGGTGAAGGaccgcaggagaaagagagagaaatacgcTGACAAGAGAAAGAAGGATGACGAGGACCCTAAGGATCCTAAGAGGAGGAAAGACGTGAACCTGGTCATCCCTTACAACCTGTCTGCAGACAACTCTAACCTCTCAGCCGACGGAGATGATTCATTCATCAGTGTAGACATGGACGACTCTGCCATGCCTAGTCCCTTCagtgagCCCCTCACCTGgccccttcttcctcctcctgttcttcctcctcttcctcaccctaACCCCCAGGTGTGTgcatctctcctgtctctccctggtCAGATCTCTCTGAGTAGTGAGCTCCAGCCCAGCTCCCTACCTCCAGACCAGGACCCAGACCAGGACCCAGATCCAGACCAGGATGAGAGCAGTAGTGACATGCTGGTCATCGTAGACGACCCTGTGTCTTCAGCACCACAGTCCAGGGCCACCAACTCGCCTGTCAGCGTGTCCGGATCTATGTCGGACAACATGAACGGTGTGTCTAATCAGGACACGTCCAGTCCGGGGCGGGGAAGGTCTGGTAGGAGCCGGGGACGACCCAAAGGCTCTGGGTCCAGTTCTGGAGGCGGAGCCAAGTCTGCAGGGAAGGGGCGTGTCAGGAAGTCGACAGCGGGCAGCGCAGCCGCCATGGCAGGAGCGATGGCCGGAGCTGCAGCAGCCTCAGCAGCCTACGGATACAGTGTGACTAAAGCGGGTCTCCCTGCAGCCTCCCCGCTTCAGCCGTCTCTGGGTCGGTCAGGGACGGCCCCAGCCTTCTCCCCCAGCAGAAGTTCCTCTCCCAAGGGGAAAGGTGGCACTGTGGCCCCCAGCCAGATTAACCCCCAGCAGAAACAACCAGGACATAGCCACCACCACAGTCATGTGACAGGAAGGAAGGGCAAGGGACCTGGCGCACCTGGCGCTCGATAGCATGTAGAGATGATGGACATcaacacagtatacacacacacacacacacacacacacagtcctaagGATCTGATAGGGACCAGGATGGTCCAGACCTTCTGCTATTGTGGGGAGTCTTCTGTGTTTTAAACAAGCACATCTGCTGCACTGACCAGCTTCAACTGTGAGCCCATGTGACCTGCTCCACAACCAATCAACCCAGAGGTGAGATGTTCCTTAACCAATCACATACCTCACTGCCTGGAGGACCATGCTATCCCGGGAAGGCGTAGCGACGGAACAAATGAGCAGTGTCGGGCATGATGGACACTAAACTAttctgtgtgtacacacacacacacacacacacacacacacaaaccatcatCGCAAGGTCCAAAAGACACCCTCATCGCTTCCACCAATCACCTTGTCCTTCCCTTCCACCAATCACCTCCTTCTTCCCTTCCACCAATCACCTCTTCCTTCCCTTCCACCAATCACCTCCTTCTTCCCTTCCACCAATCACCTCGTCCTTCCCTTCCACCAATCACCTCGTCCTTCCCTTCCAACAATCACCTCTTCCTTCCCTTCCACCAATCACCTCTTCCTTCCCTTCCACCAATCACCTCCTTCTTCCCTTCCACCAATCACCTCTTCCTTCCCTTCCAACAATCACCTCTTCCTTCCCTTCCACCAATCACctcttccttcccttcccttccaccaaTCACCTCTTCCTTCCCTTCCACCAATCACCTCTTCCTTCCCTTCCAACAATCACCTCTTCCTTCCCTTCCAACAATCACCTCTTCCTTCCCTTCCACCAATCACCTCCTTCTTCCCTTCCACCAATCACCTCTTCCTTCCCTTCCAACAATCACCTCTTCCTTCCCTTCCACCAATCACCTCTTCCTTCCCTTCCACCAATCACCTCGTCTTCCCTTCCACCAATCACCTCGTCCTTCCCTTCCACCAATCACCTCTTCCTTCCCTTCCACCAATCACCTCTTCCTTCCATTAGTACCCTCCTCAGTGGACagcctccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgaccaAGAGTATTAGAGTATTTCAAAGTGGTTTCTCTGTGACGAAAATAGACTTGGTTTTCTGTCTAAATACGGAGAAGCGACTAGCCTGAGCAGCAGCCTGTCGGGGCTGTGTTGACAACTCCTTCGACACTCATTGGGTTTGCAATAAAacaccagcagacagacaggcgctCGGGCTTTAAGGCAACACCTTACAGCAACAATGCATCCACGCGTTTAAGGGTTTCTGACACAGACTGCTCTCTCCGCTGAGCCATCTCATCCGTTAGATGAAACACGTGTTAAGGGTTAGGTCGGGAATGCTTGCGTCAAACGTTAGGTTTTATGTCATATGTTTAAAACGCGTAGTAATGCTGGAACTACTCTTCTCTGCATTTCAACAACAGAATGTAAATTCGTACCAAACAACTAAAAACGGACTGCTTTTTTAAATTATAGCtcttatttttatatttatagACCAACCCAATGTTGTCATAGCGACCCATATCAAAATGGCAAATTTGAATACCGTTTTGAAAAaaagcctccctctctctctctctctctctctctctctctctcctttctccataGAGTTTATCCCAACACAAAGAGAAATGAAGgaattataatatatattttttctgatGAGAACTGATTGAAGGGGTATTTTGAATTCCAAAGTGGTGAGCACTGCTTAATAAAGATGTTGCTGATCTGTTGCTGATCTGTTGCTGATCTGTTTGTGTACAACTCTCGTGTGCTtctgaaatgacaccctgttcACTGTTCACCCTACGTCTTGATTCaactctggccaaaagtagtacactatttcaggaataggatgccatttcagtTGCAACCTAATAGGTGTCCTTAAAAACTTAACATGGATTCTAATATGTACCATAGAACTGAggttaatttaaaagttggtaATAATTTATCAGAATTCATGTcaacattgtaaaaaaaaaaaaaaattgtattgatgccatttttatttttaaaaacagaaagagaaaaaaaaaaaaagttatacttCTGATCAGAGTCTTTTGTCTTTGTGATGTCattcagtgatgttttgggggtATGTTGACTCATGTTAATTAAAAGTTGTTGAACTAGGGTTGCCAAATCCTGGTAACTTTTCCACATTTCCccgattttttttacatttttttattttattttttttaatttatttttttccccccagaaGTACCGGTTGGAGGGTTCTCTGAATTTCTGCTTTGTCATTCCCTCGTAAGGATTTCTAGAAAACcggggaattttgggaaagttagcGTAATTGTGCAACCCTATGTGGAACCAAGCACTATGTCTAGTTTTGAACGTTTGTTCTGTGTTGGATACTATATAGTGTGATGATGAAATCTCCTATAACATGTAAATAAAAATTGAGGGCGACATGTGTTGACCCCTGGTTGGTTCTTCCCCCAGTTTGCCTGTCTATTTTTATAGGTCAtgtgtaaatatgaatacaaaagCTGTCATTTTACTAAGCGGAGAAGCCAATTCAAAAATAAAAGATTGATTAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396943 lncRNA upstream 37807 39523399 ~ 39525963 (+) False G350733
TU396946 lncRNA upstream 37807 39523399 ~ 39525963 (+) False G350733
TU396945 lncRNA upstream 37807 39523817 ~ 39525963 (+) True G350733
TU396909 lncRNA upstream 88082 39475199 ~ 39475688 (+) True G350708
TU396888 lncRNA upstream 121096 39442438 ~ 39442674 (+) True G350688
TU397000 lncRNA downstream 6757 39658463 ~ 39658882 (+) True G350783
TU397005 lncRNA downstream 9967 39661673 ~ 39661953 (+) True G350788
TU397007 lncRNA downstream 18395 39670101 ~ 39713265 (+) True G350790
TU397036 lncRNA downstream 83107 39734813 ~ 39735025 (+) True G350814
TU397037 lncRNA downstream 86878 39738584 ~ 39739225 (+) True G350815
XM_036976263.1 mRNA upstream 1150 39528427 ~ 39562620 (+) True vps18
NM_001160586.2 mRNA upstream 85366 39473308 ~ 39478404 (+) True pigh
XM_036976254.1 mRNA upstream 179270 39222711 ~ 39384500 (+) False rgs6
XM_036976247.1 mRNA upstream 376906 39122224 ~ 39186864 (+) False LOC110521105
XM_021601071.2 mRNA downstream 530671 40182377 ~ 40265689 (+) False syndig1l
XM_036976266.1 mRNA downstream 659932 40311638 ~ 40312681 (+) True LOC118964479
XM_036976308.1 mRNA downstream 727828 40379534 ~ 40386303 (+) True LOC118936457
XR_005051537.1 mRNA downstream 739944 40391650 ~ 40393235 (+) False LOC110522596
XM_036976287.1 mRNA downstream 739945 40391651 ~ 40415618 (+) False LOC110522596
TU396863 other upstream 174296 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 174335 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 658996 38903730 ~ 38904774 (+) True G350211
TU396268 other upstream 666114 38894143 ~ 38897656 (+) True LOC110522591
TU396263 other upstream 667249 38894143 ~ 38896521 (+) False LOC110522591
TU397710 other downstream 482981 40134687 ~ 40136773 (+) False G351441
TU397708 other downstream 483260 40134966 ~ 40136773 (+) True G351441
TU398718 other downstream 1338453 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 1558541 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 1559407 41211113 ~ 41213949 (+) True G352341

Expression Profile