RNA id: XM_036976279.1


Basic Information

Item Value
RNA id XM_036976279.1
length 1249
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110522596
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40391650 ~ 40437808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGCCTTTATGAGGTGCAACCAAAACAGCTGTTAGACATAGCAACAGGAATATTCTGGCAGGCTGTCGAGAATTAGTTCTTGAATACTGTTGTGGTTTTGATCACTAATATGGCTGTGACTTTTGGACTCTCTTTGAGtgtttCTTGGATTTGTTGCCTGCTAATTGGAGGGATAAGTTGTTTTACCCTTCAAGGTGATGCTTATGGGCATCCTTCCAGCACTGGACCTAAACAAACTGGATCCCAAGCAAGTGTGGCGTCTGGTCCAAATGCTAAAGCTACTGGCTACAATACCCTGGCAAGTGTGACGCAGGGTCCAAATGCTGAAGCAACTGCCAGCCATACCTCTGCAGAAGCGGCCGCCGGCCCCCGCGCCTCTGAAGCAACTGCCAACCATGCCTCGGCAGAAGCGGCCCGCTCCTCAGCTGAAGCGAATGCCAACCATACCTCTGCAGAAGTGGCCCACGCCTCAGCTGAAGCAACTGCCAACCATGTCTCTGCAGAAGCGGCTGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAACCATACCCCTGCAGAAGCGGCTGGCCCCTGTGCCTCAGCTGAAGCAACTGTCAACCATACCTCTGCAGAAGAAGCCCGCGCCTCAGCTGAAGCAACTGCCAACCATGTCTCTGCAGAAGCGGCTGGCCCCTGCGCCTCAGCTGAAGCAACTGCCAACCATACCTCTGCAGAAGCGTCCGCCGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAACCATACCCCTGCAGAAGCGTCCGCCGGCTCCCACGCCTCTGCTGAAGCAACTGCCAACCATACTCCTGCAGAAGCGTCCGCCGGCCCCCACGCCTCTGCAGGAGCGGCGGCCGGCCTTGAACAGACGGCCCGACCCCTCAACAAGCTAGATAGGGAGATCATCATTTGGTTTGCCCAACTCCTTAATCGTCTTTCTCCTGTTACTGTGCCTCCATTTGAAGAAAAGGGCAAAGGTAACTGAGGTGAGAAATTGTGCAAACTAATGCTCTTGTTTGAAATGAGGATCTCCTTCACTTGCACATCTTTATGCAAATTGTTTACAGGGGTGAACACTACAATGGTATGAATTGTTTTCAAAACCATATGACAAATTGACATCTGATTTGGCCACTATTGCTGACACTTAGGTTCTACGGTTATGATTTGATGTGTCCTGGTGTTCCTGCTACTCTTGCATGATTTGTTCAATAAACAATTTGACTTCCAAAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397961 lncRNA upstream 40256 40359939 ~ 40373918 (+) True G351643
TU397736 lncRNA upstream 144427 40233300 ~ 40269747 (+) False G351466
TU397737 lncRNA upstream 144427 40233300 ~ 40269747 (+) False G351466
TU397739 lncRNA upstream 144427 40233300 ~ 40269747 (+) True G351466
TU397744 lncRNA upstream 145513 40204070 ~ 40268661 (+) True syndig1l
TU398106 lncRNA downstream 32955 40465812 ~ 40466209 (+) True G351739
TU398139 lncRNA downstream 68067 40500924 ~ 40501156 (+) True G351771
TU398141 lncRNA downstream 69375 40502232 ~ 40502684 (+) True G351773
TU398154 lncRNA downstream 80861 40513718 ~ 40514109 (+) True G351786
TU398162 lncRNA downstream 164755 40597612 ~ 40598001 (+) True G351789
XR_005051537.1 mRNA upstream 20939 40391650 ~ 40393235 (+) False LOC110522596
XM_036976308.1 mRNA upstream 27871 40379534 ~ 40386303 (+) True LOC118936457
XM_036976266.1 mRNA upstream 101493 40311638 ~ 40312681 (+) True LOC118964479
XM_021601071.2 mRNA upstream 148485 40182377 ~ 40265689 (+) False syndig1l
XM_036976260.1 mRNA upstream 762468 39563770 ~ 39651706 (+) False ino80
XM_036976288.1 mRNA downstream 3694 40436551 ~ 40437808 (+) True LOC110522596
XM_036976311.1 mRNA downstream 146829 40579686 ~ 40597389 (+) True stmn4
NM_001124651.1 mRNA downstream 193536 40626393 ~ 40629684 (+) False paqr8
XM_021598373.2 mRNA downstream 193757 40626614 ~ 40630821 (+) True paqr8
XM_036976314.1 mRNA downstream 217797 40650654 ~ 40674577 (+) False LOC110521109
TU397710 other upstream 277401 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 277401 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1024700 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1024739 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1509400 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 557302 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 777390 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 778256 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 933344 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1691819 42124676 ~ 42125759 (+) True G353125

Expression Profile