RNA id: TU396860


Basic Information

Item Value
RNA id TU396860
length 280
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G350665
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39388141 ~ 39389474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACCCAAAACGGACACAGTATGATATCCATATAAAATCGATGGTCTCCGAACTAAAACAAAATTATATTGACACATATATTTCTTGGAGTGGGAAGTTGGCATGGTGATATAAACAGGAAGACATGTTGTTAAAATGTCTGACATGAGGGGGGAAGAATAAGGAAAACATTAAAATGTTATTGACATCATGGATGCATCTCAAATGGTACACTTCCTTAAATACATTACCGGGCAAAACCTTTAGAaaacctactcattaaagggtttttctttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396791 lncRNA upstream 3746 39383959 ~ 39384395 (+) True rgs6
TU396782 lncRNA upstream 172778 39214912 ~ 39215363 (+) True G350594
TU396774 lncRNA upstream 187663 39200079 ~ 39200478 (+) True G350586
TU396773 lncRNA upstream 195499 39192388 ~ 39192642 (+) True G350585
TU396581 lncRNA upstream 197984 39186299 ~ 39190157 (+) False LOC110521105
TU396858 lncRNA downstream 1183 39389603 ~ 39391386 (+) True G350664
TU396873 lncRNA downstream 23409 39411829 ~ 39412089 (+) True G350674
TU396888 lncRNA downstream 54018 39442438 ~ 39442674 (+) True G350688
TU396909 lncRNA downstream 86779 39475199 ~ 39475688 (+) True G350708
TU396943 lncRNA downstream 134979 39523399 ~ 39525963 (+) False G350733
XM_036976254.1 mRNA upstream 3641 39222711 ~ 39384500 (+) False rgs6
XM_036976245.1 mRNA upstream 201277 39122224 ~ 39186864 (+) False LOC110521105
XM_036976247.1 mRNA upstream 201277 39122224 ~ 39186864 (+) False LOC110521105
XM_036976244.1 mRNA upstream 201278 39122224 ~ 39186863 (+) False LOC110521105
XM_036976246.1 mRNA upstream 201278 39122225 ~ 39186863 (+) False LOC110521105
NM_001160586.2 mRNA downstream 84888 39473308 ~ 39478404 (+) True pigh
XM_036976263.1 mRNA downstream 140007 39528427 ~ 39562620 (+) True vps18
XM_036976258.1 mRNA downstream 175159 39563579 ~ 39651706 (+) False ino80
XM_036976261.1 mRNA downstream 175159 39563579 ~ 39651706 (+) False ino80
XM_036976262.1 mRNA downstream 175160 39563580 ~ 39651706 (+) False ino80
TU396290 other upstream 483367 38903730 ~ 38904774 (+) True G350211
TU396268 other upstream 490485 38894143 ~ 38897656 (+) True LOC110522591
TU396263 other upstream 491620 38894143 ~ 38896521 (+) False LOC110522591
TU396266 other upstream 492120 38890383 ~ 38896021 (+) False LOC110522591
TU396863 other downstream 169 39388589 ~ 39389474 (+) True G350665
TU397710 other downstream 746267 40134687 ~ 40136773 (+) False G351441
TU397708 other downstream 746546 40134966 ~ 40136773 (+) True G351441
TU398718 other downstream 1601739 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 1821827 41210247 ~ 41210998 (+) True G352340

Expression Profile