RNA id: TCONS_00030852


Basic Information

Item Value
RNA id TCONS_00030852
length 1746
RNA type mRNA
GC content 0.44
exon number 1
gene id XLOC_015413
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23130389 ~ 23132134 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTTTTACAGACATGAAGCTCTCAACACATTTCAGTCAAATCTGATGAAGAAGTTTGATAGCCTCTGTGAGGGAACAGCGGCGCAGGGAAAATGTATACTCCTGAATGAGATCTACACAGAACTCTACATCACACAGAGCGAGAGTGGAGTGATCAGTAATGAGCATGAGGTAAGACAAATTGAGACACAATCCAGGAGATCAACAACAGCGGACACACCAATCAAATGCAGCGACATTTTTACACGTTTACCTGGACAAGACAAAGCCATCAGATCTGTGCTGACAAAGGGAATCGCTGGCATCGGAAAAacagtctctgtgcagaagtttaTTGTGGACTGGGTTGAAAAGAAGGAGAATCAGGACCTCCAGCTCATATTTCCACTTCCTTTCAGAGAGCTCAATCTGATGAAGGACAAAACGCTCAGACTTCCAAATCTTCTTCATGCCTTTTTCCCTGAAACAAAGAACATTGAAGTATTTGATGATAAATATACCGTGTTGTTCATTTTTGATGTTCTTGATGAGTGTTGTCTGTCTCTGAATTTTAAGAGCACTGTGAGGTTTTGTGATGTCAGTGAATCAGCCTCAGTAGACGTGCTGCTGACGAATCTGATTGTGGGgaatctgcttccctctgctcccATCTGGATCACTTCCAGACCAGCGGCAGCAAATCTCCTTCCATCTGACTGTATTCATAGAGTGACAGAGGTACGAGGTTTCGTAGACCCTCAGAAAGAGGAATACTTCAGGAAGAAGATCAGAGATCAGAGTTTGGCCAACAGAATCATCTCACACCTGAAGTCTTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTACTAGGGAAAATGTTGAATGAAGCAGAGAGTGGAGAGATTCCCAAGACTCTCACTCACATGTACACACACTTCCTGATCCTGCAAACCAACGTCAAACGTGGGAAGCACTATGAGTACAAGGTGAGAGATGAAGACATGATCCTCAGTCGGGGGAAACTAGCTTTTCAGCAGCTTGTGAAAggcaatgtgatcttctatgaggaAGACCTGAGAGACTGTGGCATTATTGTGACAGAGGCATCTGTTTACTCAGGGTTGTGCACTCAGATCTTCAGAGACGAGTTGGTTTTGTGTCAGAGGAAAGTCTTCACCTTTGTTCATCTGTGCATTCAGGAACATCTAACGGCTCTTTATGCGCACCTTTCCTGtctaaacaaaaacataaatgtctttgagcaaGTTACGTTTGAACATGTTCCTTTGTCTAACCTGCATCAGAGAGCTGTGGATGAGGGTCTACAGAGTAACAATGGACATCTGGATCTTTTCCTACGGTTTCTGTTGGGTCTGTCAGTGGAGTCAATTCAGAATCTCCGGCAGGGACAAATGAAAGGGACAAAAAGAAACTCTGACAGTTGTGAGGACACAGTTGAGTACGTCAAGACGAAGATCAGCACCGTTTTCTCTCTAGAGAAATCCATCAATCTGTTTCACTGTCTGAACGAACTGGGTGACCATTCACTAGTGGAGGAAGTACGACAGTATCTGAGAACTGAACAGCTACATAAAACCAAACTCTCTTCATCTCAGTGGTCAGCTGtggtttttgtgtttttgacagcAGAGAAGAAGCTGGAAAATTTCgaaattaatgaatttgttaGTGGAAACGACCAGACTGGAAGTGTTGAAGAAGCTGCTGCCTGTGATTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142834

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033523 lncRNA upstream 103411 23025321 ~ 23026978 (+) True XLOC_015410
TCONS_00033522 lncRNA upstream 115773 23006792 ~ 23014616 (+) False XLOC_015409
TCONS_00030845 lncRNA upstream 115773 23011833 ~ 23014616 (+) True XLOC_015409
TCONS_00030842 lncRNA upstream 116345 23006792 ~ 23014044 (+) False XLOC_015409
TCONS_00033521 lncRNA upstream 138360 22985130 ~ 22992029 (+) False XLOC_015408
TCONS_00033524 lncRNA downstream 23878 23156012 ~ 23184804 (+) False XLOC_015414
TCONS_00033525 lncRNA downstream 23880 23156014 ~ 23184804 (+) False XLOC_015414
TCONS_00030853 lncRNA downstream 23913 23156047 ~ 23184804 (+) True XLOC_015414
TCONS_00033526 lncRNA downstream 274319 23406453 ~ 23410848 (+) False XLOC_015418
TCONS_00033528 lncRNA downstream 274319 23406453 ~ 23442528 (+) False XLOC_015418
TCONS_00030851 mRNA upstream 27240 23081402 ~ 23103149 (+) True XLOC_015412
TCONS_00030850 mRNA upstream 30745 23081248 ~ 23099644 (+) False XLOC_015412
TCONS_00030849 mRNA upstream 30746 23081247 ~ 23099643 (+) False XLOC_015412
TCONS_00030846 mRNA upstream 51641 23039041 ~ 23078748 (+) False XLOC_015411
TCONS_00030848 mRNA upstream 52906 23062085 ~ 23077483 (+) True XLOC_015411
TCONS_00030854 mRNA downstream 90805 23222939 ~ 23293501 (+) False XLOC_015415
TCONS_00030857 mRNA downstream 219320 23351454 ~ 23361933 (+) False XLOC_015417
TCONS_00030858 mRNA downstream 219399 23351533 ~ 23355705 (+) False XLOC_015417
TCONS_00030859 mRNA downstream 220168 23352302 ~ 23361009 (+) True XLOC_015417
TCONS_00030860 mRNA downstream 350664 23482798 ~ 23484348 (+) True XLOC_015421
TCONS_00030841 other upstream 138868 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 463689 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 1754795 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 1887371 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030793 other upstream 1952724 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030855 other downstream 125643 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 142198 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030864 other downstream 547739 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 881116 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 1216455 24348589 ~ 24351040 (+) True XLOC_015440

Expression Profile

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