RNA id: TCONS_00033262


Basic Information

Item Value
RNA id TCONS_00033262
length 1433
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id XLOC_015422
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23541727 ~ 23609276 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGTCGCTGCATAGACGGTTCCAAAACCTCCTTCACCGAGCTCATCACCAACTTCATATTGGCGTGAATTGATGACTGTTAAAGAGAAATCAGAGATGAGGGAATAAAATGTGACAGCACTTACTACTACTAAATCCAATTAAGAGCtactttttattttctaaagACAAATTAGCTGAATATTAGTTATCAACAACATTTAAACAATCTGTATATTGAAGTCAGTCTGAAGCACAGCCCACTAAACTGTAGGGGTCTAACTATTCGCACCTAACCATTTCAGTACAGGACTTTAAGTTCAGTCAGTGTGTACAAAATATGGACAAAAAGACATTTGAGGGGAAAAGTGACACTGCTGGATGTAAATGCTCAGTAGTGCTCTGCTGCAACACTGCACTGACAAACACATCTGTGTGCATGAATGAACAAGAGTGAGTACAACAACTTCACAAATATTCACAGTGTTCCAGAATTCAGCATTTTCTGAATACAGGTGAAAAATGTTTCATTAGAAACGTAAATGTTACTGGTGTTTTCTTCTGTCAGATAACATTTGGCagagtttttagttttatttttattcatgcagCAAAGGTTTAATAATTATTGTCCATTATTTTTAATGACTGAAAAATCCTAATATATATtctaatttatttgtatattgattTATGTAGAATTCACCTTTTGTCACGTTATTAGTCCTctaacttttacttttttaatagtaataaacGGTAAACAAAAATCACAAGCATTTTTtaagttttgcttgtttttttatttcaaactgtAATAAAATTGAACAGAACTATTTATCCTTACACCCTACTAAACTGAAGTAAACCTGTAAATGTTCACTGAATTACTGAATGAGTGTCAAGGTAGCAAACTTACCGAAAATTGTTTTCTCCTTCTCCTGAGGAACTGATGGCACTGCAGCTTGAAGGACATCATCCTCACTACAGTCGGACGTGGCACAGGCTGTAGGGACGTCGTCAACACTTTGAGCTGCAGCATGGTCTGGAGTTTGGAGGGTCAGTTCAGTGCTGGGAGATTGGAGGACATCACTGTGGTCGTCAACACGGACTGGACAACCACTGGTGCTTAGTTCCTCCGATAGCAGCTGGCATGACTGTGGCTCAGTGTCCCGAAGAACACGTGCACACAAGTTAGCTAGCAAAGGCACTGCAACTTGAAGGACATCATCCTCACTACAGTCGGGAGAATAGAGGACAACACTCTGGTCGTCAACATGGACTGGACAGCCACTGGTGCTTGGTTCCTCCGATGACAGCTGGCATGACTGTGGCTCAGTGTCCCGAAGAACACGTGCACACAAGTTAGCTAGCAAAGGCACTGCAGCTTGAAGGACATCATCCTCACTGCAGTCGGGAGAATAGAGGACAACACTGTGGTCGTCAACATGGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033531 lncRNA upstream 62481 23440077 ~ 23479246 (+) True XLOC_015418
TCONS_00033532 lncRNA upstream 90326 23450772 ~ 23451401 (+) True XLOC_015420
TCONS_00033528 lncRNA upstream 99199 23406453 ~ 23442528 (+) False XLOC_015418
TCONS_00033527 lncRNA upstream 99199 23406453 ~ 23442528 (+) False XLOC_015418
TCONS_00033530 lncRNA upstream 120680 23414883 ~ 23421047 (+) True XLOC_015419
TCONS_00033535 lncRNA downstream 5095 23550186 ~ 23557515 (+) True XLOC_015423
TCONS_00033536 lncRNA downstream 30910 23576001 ~ 23609276 (+) True XLOC_015422
TCONS_00030862 lncRNA downstream 68015 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00033537 lncRNA downstream 227827 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00033538 lncRNA downstream 391444 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00030860 mRNA upstream 57379 23482798 ~ 23484348 (+) True XLOC_015421
TCONS_00030857 mRNA upstream 179794 23351454 ~ 23361933 (+) False XLOC_015417
TCONS_00030859 mRNA upstream 180718 23352302 ~ 23361009 (+) True XLOC_015417
TCONS_00030858 mRNA upstream 186022 23351533 ~ 23355705 (+) False XLOC_015417
TCONS_00030854 mRNA upstream 248226 23222939 ~ 23293501 (+) False XLOC_015415
TCONS_00030861 mRNA downstream 67949 23613040 ~ 23620219 (+) False XLOC_015424
TCONS_00030863 mRNA downstream 132088 23677179 ~ 23713760 (+) False XLOC_015425
TCONS_00030865 mRNA downstream 156522 23701613 ~ 23726605 (+) True XLOC_015425
TCONS_00030866 mRNA downstream 186103 23731194 ~ 23745290 (+) True XLOC_015427
TCONS_00030867 mRNA downstream 245657 23790748 ~ 23805139 (+) True XLOC_015429
TCONS_00030856 other upstream 266946 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 283830 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 550206 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 875027 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 2166133 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030864 other downstream 134782 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 468159 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 803498 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 939198 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 994956 24540047 ~ 24540765 (+) False XLOC_015445

Expression Profile

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