Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030879 |
| length | 798 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_015436 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 24177006 ~ 24252506 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0031175 | neuron projection development | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0015631 | tubulin binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070912-581 | Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization and neuron projection development. Predicted to be located in cytoplasm and microtubule. Predicted to be active in neuron projection. Is expressed in brain and liver. Orthologous to human MAP4 (microtubule associated protein 4). |
| ensembl_id | ENSDART00000140575 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033539 | lncRNA | upstream | 174828 | 24022798 ~ 24024448 (+) | True | XLOC_015434 |
| TCONS_00033538 | lncRNA | upstream | 258946 | 23936535 ~ 23940330 (+) | True | XLOC_015432 |
| TCONS_00033537 | lncRNA | upstream | 419847 | 23772918 ~ 23779429 (+) | True | XLOC_015428 |
| TCONS_00030862 | lncRNA | upstream | 579053 | 23613106 ~ 23620223 (+) | True | XLOC_015424 |
| TCONS_00033536 | lncRNA | upstream | 590000 | 23576001 ~ 23609276 (+) | True | XLOC_015422 |
| TCONS_00030881 | lncRNA | downstream | 41563 | 24261217 ~ 24261296 (+) | True | XLOC_015437 |
| TCONS_00033540 | lncRNA | downstream | 264619 | 24484273 ~ 24488154 (+) | False | XLOC_015443 |
| TCONS_00030890 | lncRNA | downstream | 264621 | 24484275 ~ 24488154 (+) | False | XLOC_015443 |
| TCONS_00030894 | lncRNA | downstream | 288116 | 24507770 ~ 24509698 (+) | False | XLOC_015444 |
| TCONS_00033541 | lncRNA | downstream | 383638 | 24603292 ~ 24612068 (+) | True | XLOC_015446 |
| TCONS_00030871 | mRNA | upstream | 30606 | 24080694 ~ 24168670 (+) | False | XLOC_015435 |
| TCONS_00030872 | mRNA | upstream | 33680 | 24081050 ~ 24165596 (+) | True | XLOC_015435 |
| TCONS_00030869 | mRNA | upstream | 361853 | 23823622 ~ 23837423 (+) | True | XLOC_015431 |
| TCONS_00030868 | mRNA | upstream | 378996 | 23808640 ~ 23820280 (+) | True | XLOC_015430 |
| TCONS_00030867 | mRNA | upstream | 394137 | 23790748 ~ 23805139 (+) | True | XLOC_015429 |
| TCONS_00030882 | mRNA | downstream | 85200 | 24304854 ~ 24308682 (+) | True | XLOC_015438 |
| TCONS_00030883 | mRNA | downstream | 97811 | 24317465 ~ 24320183 (+) | False | XLOC_015439 |
| TCONS_00030884 | mRNA | downstream | 97833 | 24317487 ~ 24319965 (+) | True | XLOC_015439 |
| TCONS_00030886 | mRNA | downstream | 132843 | 24352497 ~ 24355324 (+) | True | XLOC_015441 |
| TCONS_00030887 | mRNA | downstream | 154651 | 24374305 ~ 24386382 (+) | False | XLOC_015442 |
| TCONS_00030870 | other | upstream | 184333 | 24013250 ~ 24014943 (+) | True | XLOC_015433 |
| TCONS_00030864 | other | upstream | 519287 | 23679873 ~ 23679989 (+) | True | XLOC_015426 |
| TCONS_00030856 | other | upstream | 924495 | 23274332 ~ 23274781 (+) | True | XLOC_015415 |
| TCONS_00030855 | other | upstream | 941379 | 23257777 ~ 23257897 (+) | True | XLOC_015416 |
| TCONS_00030841 | other | upstream | 1207755 | 22986282 ~ 22991521 (+) | True | XLOC_015408 |
| TCONS_00030885 | other | downstream | 128935 | 24348589 ~ 24351040 (+) | True | XLOC_015440 |
| TCONS_00030891 | other | downstream | 264635 | 24484289 ~ 24497841 (+) | True | XLOC_015443 |
| TCONS_00030897 | other | downstream | 320393 | 24540047 ~ 24540765 (+) | False | XLOC_015445 |
| TCONS_00030898 | other | downstream | 320555 | 24540209 ~ 24540725 (+) | True | XLOC_015445 |
| TCONS_00030908 | other | downstream | 622933 | 24842587 ~ 24845999 (+) | True | XLOC_015452 |
