RNA id: TCONS_00030890


Basic Information

Item Value
RNA id TCONS_00030890
length 777
lncRNA type antisense
GC content 0.48
exon number 3
gene id XLOC_015443
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24484273 ~ 24497841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACCTGACAGTCTCGGCGTCCGTTTCCACAGGAAGCTCAGCTACCACAGTCTTTTGGTCTTGTCGCTTTTTGGTCTCTACAAATGTAGGACGTTTGTCAGCGTAAGCCATTATTGACAGGCTACATCATAATATTCATTTGTCCTGGACGGCTGAATAAGTGACAGTAATAGACCGAGGCCCAGAGGAAGAAGATGAAGACATGCTATCAAGAGCAGCTGTGACACGGCAGCTGGTCTGACAGTGTGTATGTGGTCTGAATACACATCTTTTCATCTAAGCTTTAGAAAATCGTCAAGGCTCTACATCTGATCTGAGTTCAGCAGTACTGAATCAGTTCATTCATGGTGCATCCAGAAGTACAGCAGACCCCTGCTGGGCCCGCATCACGCCGACTCCTGGACGACACACTGAGATCCTGCATGGTGGTGGAGTGATCCAGAGGCTCTGCTGGTGGGCTTGTGTGCTGGCGGGGGTCTGGATGCCCTCTCACGCTCTCAGGGGTGTCCCGCTCCCTCCACTGCTCATCTTCAACAGCCGGAGACCCTCTCTGGTGCACAACGAGGTCTCTATCCAGCCAGTTTTGGAGATTCCCTGAAAAATGACATGAGAGGATGAGAAAAGATGCATTAACCCTCATCTTGGGTTCTAATcagcttttattattgttttggatCAGTGGAGTAACATCTAGCACTGAAATTGTGGGTCAACTGTTATCATAATGATAACCAAAACTGTATCGCACATTCCACAATAATAAACAATGTCAAAGCA

Function

GO:

id name namespace
GO:0005802 trans-Golgi network cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000139173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030881 lncRNA upstream 222979 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00033539 lncRNA upstream 459827 24022798 ~ 24024448 (+) True XLOC_015434
TCONS_00033538 lncRNA upstream 543945 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033537 lncRNA upstream 704846 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00030862 lncRNA upstream 864052 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00030894 lncRNA downstream 19616 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00033541 lncRNA downstream 115138 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00033542 lncRNA downstream 228160 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00030903 lncRNA downstream 274484 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033543 lncRNA downstream 415512 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00030887 mRNA upstream 97893 24374305 ~ 24386382 (+) False XLOC_015442
TCONS_00030889 mRNA upstream 102234 24376373 ~ 24382041 (+) True XLOC_015442
TCONS_00030888 mRNA upstream 107666 24374669 ~ 24376609 (+) False XLOC_015442
TCONS_00030886 mRNA upstream 128951 24352497 ~ 24355324 (+) True XLOC_015441
TCONS_00030883 mRNA upstream 164092 24317465 ~ 24320183 (+) False XLOC_015439
TCONS_00030892 mRNA downstream 19443 24507597 ~ 24509698 (+) False XLOC_015444
TCONS_00030893 mRNA downstream 19616 24507770 ~ 24509696 (+) False XLOC_015444
TCONS_00030895 mRNA downstream 19623 24507777 ~ 24509696 (+) True XLOC_015444
TCONS_00030896 mRNA downstream 48608 24536762 ~ 24542518 (+) False XLOC_015445
TCONS_00030899 mRNA downstream 150213 24638367 ~ 24683365 (+) True XLOC_015447
TCONS_00030885 other upstream 133235 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030870 other upstream 469332 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030864 other upstream 804286 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030856 other upstream 1209494 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 1226378 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030897 other downstream 51893 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other downstream 52055 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030908 other downstream 354433 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030940 other downstream 1546021 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1798311 26286465 ~ 26287505 (+) True XLOC_015473

Expression Profile

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