RNA id: XM_021602295.2


Basic Information

Item Value
RNA id XM_021602295.2
length 2348
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110523527
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27659144 ~ 27664034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTTGCAGACCTTATCAAACGTGAAAAAGGTCAATTTACATttgataataacaataacaaacaCTCATGTGTTAGGAGAACGTAGAAATGGCAATTCTGCGTGCTTTTGTAGACTTGACGGTAGAGGGTTTGTTTGCATAGTGTCATTACAGGTTTGCAAAGTGTGCCTAGTTAGACAGCTTTCTCACAACTTGAACTTGACAGCATCTGTAGCTTCTCCTGTTGTaggtaactaacgttagctagctagctatggcaATTGGCCGCGGACAACTTTTCCGCAGTTTCAGAGAGGGTTTGTTGAAGAATGCCCCGCCAACAGAGGGTCAAGGACCGACAGGCAAAGAGAATAGCAGACTCTGCGAGAAAATGACTGGATTTTCCCCGGGCATTCAAAGTGTGGAACCACCAACACTGCCACgaaagaagaagaggaaaaaGAAGGCGGCAAAGGCTACTGTACTCTGTCAGCCAGTTGTACCACTGCCAAGGGTACCTACAAAGTCTACTGGACATGCTGGCAAGCCAGCTGAGTGCACACCGAATCACATAGAGAGGATGCCACCGGAGATCCTTCTGAAGATCCTATCGTACCTggatgccctctctctcttctccatcggCTTCACCAACAAGCGATTCTATGAGATGGCCCACAACAATGGAATGTGGCACAAGATGTATTCTGCAGAGTATGGACACAGTAAGAAGTGGAGGCCCAAGCGTTTGGACGAGGTGCTGGATAAACTGAGTGCGGTGGTGGTCCAGGAGAGACCAGAGGGCTATTGGAGAAGACTGTACTTCAGGACCATGGCTGGCTTCAATGAGACCAAGTGGAGGAAGGAGTTGAGAGACATCAACCCTTTCACAGGCTTGCCCAGTCAGACTGAAAGAATCCTCAGGAGCCAGCGTGTGACCTGGGAGATCACAGTGTCTGACaagtgggggttggaggggacGTTTGAGCAGAGTCGTGCCTACTTCTCTGACTCGTCCGTGACGGTGTGCTGGAGCAGCGGGCGCTGGCCCTCCTTCCACCAGCTCTCTACCTTACAGCTAGATGGTGTCAAAAGACAAGCTCTCAGTTCCCCTAACATCAATAAGCCTGGCTGGCGGTCTCTGATGGCTAAGTTTGACAGGAACACCATCTCTAAGAGTGGCCAGGTCATCGGTAGAGACCAACTAGTCACCCTGGTACTCTTTTCGCCTAGCATCGTCATTGGCGTCTGGAGGGGCAGGTGGTCCATTGCCTTTGTGATGGCCAGCTTCCACTACCACAGGCTGGTGGAGAGGAGTCTTCTGGGCACCTCAATGTGcccctatTCCATGCCAGAGAACAAGCCTCCTTTCGACGACATGGACCCTGACTCCGGCCTCCATGGTTACACGCTCCGCATTATACTACACAACACTGTGACCCAGATCATGGCCGGCCACTTCTCTCAACTCTACTGTAGCAAAAGTCAGGTCCATGGTGGTTTCATCCAGCTGAATGTCATCAACAGGGGAAGCCTGTCCCAGCACACCCCTCTCTCTGGCAGGATCAGCCTGCCCTGGAAGTGTGAGGCTCTAGAGGGCACCGTGGAGaatTGCTGCATGATGAGCCTGACCCTGATGGATGAGTACCAGAACCCCTTCTGGTGTGTCAGCACACCCGTGTGTATGGCACTGAACAGTAAGGAGCCATCCAACGACTACGAGGGTCAGCACTTCCTGATCAAGTACCAGGATACAGAAGGCAAGGTGAGGATGGACCTTGTGTGGCTGGAAGAGCAGAGACAGTACTTCCTCATCAATCTGGTAGTCTTCATCGCCACGGCCAAAGTCAACAAGTACTTTGGGAGAGCCTACTGACGCTGCATGTAGAGGTGGCACTGTACTACAATCCTCTATCCTAAGGCCTTCATAATGATGACAAAGTGGTGACATAAACTGTCATGACAGCTGACAACTGCTTATGACAtctgttatgttgttgttatgcAGTATAATGTAGGCCTTATGATACAAGCTTGAAGTAAAGTGTTGAGCCTGTATACAGTATGTCAATTGATGACATAGTTTAGTTGTGTTTTGTTCTGAGTAAGTTTGAAGTAGTTCAAGTTTGAGGGTTTGCCCCGGCCAGTTTTCATTATTTCtgtatatttatatagttttatGCATTGTTTTGTGAATCATTAGTACACATTGTTAAAATGTAATCCTACTTTTTTTAAGTATGTCTCGCCATATTATAAAGAGCAAAACTACATGTGAAATGTGTTAACAGAGTTGAACTATTTTGGGTTTGTAAACTTTCtgttacagatggactatctgaTTCTGATAAATATTCTGATTTATATA

Function

GO: NA

KEGG:

id description
K10298 FBXO15; F-box protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437238 lncRNA upstream 174588 27484354 ~ 27484556 (+) True G384917
TU437087 lncRNA upstream 287797 27370929 ~ 27371347 (+) True G384773
TU437084 lncRNA upstream 290451 27368457 ~ 27368693 (+) True G384770
TU436465 lncRNA upstream 392634 27262252 ~ 27266510 (+) True G384200
TU436356 lncRNA upstream 521411 27137530 ~ 27137733 (+) True G384092
TU437375 lncRNA downstream 24121 27688155 ~ 27688671 (+) True G385044
TU437478 lncRNA downstream 192646 27856680 ~ 27856887 (+) True G385139
TU437483 lncRNA downstream 199256 27863290 ~ 27891266 (+) True G385144
TU437512 lncRNA downstream 241011 27905045 ~ 27905332 (+) True G385172
TU437522 lncRNA downstream 256020 27920054 ~ 27920350 (+) True G385182
XM_036977171.1 mRNA upstream 1838 27585605 ~ 27657306 (+) False LOC110523526
XM_036977167.1 mRNA upstream 1838 27585606 ~ 27657306 (+) False LOC110523526
XM_036977169.1 mRNA upstream 1838 27585606 ~ 27657306 (+) False LOC110523526
XM_036977174.1 mRNA upstream 1838 27585606 ~ 27657306 (+) False LOC110523526
XM_036977170.1 mRNA upstream 1838 27585607 ~ 27657306 (+) False LOC110523526
XM_036976546.1 mRNA downstream 11328 27675362 ~ 27719165 (+) False LOC110522888
XR_005051579.1 mRNA downstream 71844 27735878 ~ 27741089 (+) True LOC118964522
XM_021602297.2 mRNA downstream 318611 27982645 ~ 27994415 (+) False LOC110523528
XM_021602296.2 mRNA downstream 322349 27986383 ~ 27994423 (+) False LOC110523528
XM_021602299.2 mRNA downstream 322357 27986391 ~ 27994415 (+) True LOC110523528
TU436048 other upstream 995531 26661838 ~ 26663613 (+) True G383794
TU435241 other upstream 1198448 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other upstream 1198609 26437659 ~ 26460535 (+) True LOC110522865
TU434985 other upstream 1472454 26174945 ~ 26186690 (+) True LOC110523503
TU434321 other upstream 2433414 25225442 ~ 25225730 (+) True G382186
TU437362 other downstream 11318 27675352 ~ 27683393 (+) True LOC110522888
TU437387 other downstream 42680 27706714 ~ 27707078 (+) True G385053
TU437511 other downstream 240433 27904467 ~ 27904731 (+) True G385171
TU438217 other downstream 752571 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 1262243 28926277 ~ 28930931 (+) False spag8

Expression Profile