RNA id: XM_021602316.2


Basic Information

Item Value
RNA id XM_021602316.2
length 2305
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC110523534
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28109822 ~ 28112779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCAGCATCAGTCTGGGTTCTTCACCGGAGCCCTACAGACATATTCACTCAGAGCCCGACAAAGCAGCCTGTCCTCCCAGCACAGCCATGAGTACCCTCGGCTTTGACCcttactactcctcctcctcctaccgcCGCTGGTATGTGGAGGGAGCCCCCCGAGGGGTGGTAACCAGGGGGAGGTCACGCTCGGCCTACTCAATCCacacctctcccctgtcctctgtgAGCTCCCGTTTGCAGTACTCCTCTCCTGGACGGGCTCTGCATTCATCCCCGGCTTCCTCCTCCTCCGTGGAACTGGAGCTGAGCCAGGCGGCCCAGGTGAGCTCTGAGTTCCGCACGGTGAGGACCCAGGAGAGGGCTCAGATGCAGGAGCTCAATGACCGCTTCGCCGGCTTCATCGACCGTGTGCGGGAGCTAGAGCAGCAGAACCGTGCTCTGGAGGCTGAGCTGATGCTGCTGAGGCAGAGGCATGGGGAGCCTTCCCGTCTGAGGACCCTGTATGAGCAGGAGGCTCGGGCTCTGAGGGCTGCCGTGGAGGAGGCGCGTGGGGAGCAGCAGGCCGCCCTGGGGCAGAGGGAACGTCTGGGGCAAGCCCTGAGCGCCCTACAGGCCCGCTacgaggaggaggtggtggcccGCGAGGACGCGGAGGGAAGGCTGTTGGATGCGCGGCGTGGTGCCGACCAGGCCACCCTGGCCCGGACCGAGCTGGAGAAGAGGGTGGAGACCCTGCTGGACGAGCTGGCCTTCCTCAAGAGGCTCCACGAGGGGGAGGTGGTAGAGCTCCAGGCCCAGGCCCAGCTGGGGGCCCAGGTGGCTGTGGAGATGGAGGCAACCACGCCGGATCTGTCCGGGGCTCTGAGGGACATCCGAGCCCAGTACGAGAGGCTGGCGGCCAAGAACATGCAGTCTGCTGAGGAGTGGTTCCGTGGGAAGGTGGGCTCCCTGACGGAGAGTGTGGCCCAGCACAGCGATGCAGTGAGGAGCTCCAGGGACGAGGCTGGGGAGTACCGCCGGCAGCTCCAGGCCCGCCTGCTGGAGATCGATGCCTGCAGGGGTCTCAATGAGTCTCTGGAGAAACAGTTGCATGACATGGAGGACAAGCAGAGTGCTGAGATCAATGGCATGCAGGATACTATTGGCCAGCTGGAGAATGAGCTGGGAGCCACAAAGCAGGAGATGGCTCGCTACCTGAAGGATTACCAGGACCTGCTGAATGTTAAGATGGCCCTTGACATCGAGATCGCTGCCTACAGGAAGCTGCTGGAGGGGGAGGAGTCTCGTTTCAGTGTGGGCGTGTCCGGGGGTATGTCCAGTGTCTACGGCCACACCCTGTCGGCCACACCCTCCTTTGGCCGCTCTATGTTCTCCATGCAGTCCAGCCTAAGCTCTGGCGCCCCCTACCTGATGACTTCACGCTTCTTCAGCTCCTCATTTGCCTCTGGAGATGATGTCATCTCTGCCAGCCTAGCCCAGCAGGACTCTGCCAGCCTaccacaggaggaggaggaggagaaggaggaagaggatgagaaggaggaagagaaggaagaggagggagaggataaggaggaagagggtggagaggagaaggaggaagagggtggagaggagaaggaggaaaagggagaggagaaggaggaagatggAGATGAGGGAGGCGAGGTGGAGAAAGAAGATGGGGAGGATGCTAAGGACGGCGAAGAAGCTGGGGATGAGATGGAAGAGAAGGAAGAAACTGcaaaggaggatggagagaaaaagGAAGATAAGGACAAGGGTGGGGAGCAGGAGGGAAAGGAAGGCGAGGAAGATAAAGAAGCGGGTGATAAAGAGGAAGAGGATCAAGCTGAAGCTAAAAGTGAGGAGAAAAAAGATGACAAAGCAGACACCAAAGAAGAGAAAGGTGAACCAGAGATATCCAAGACCGTTGGAAAGAGTGAAAAACCTGCCGAAGAGAAGAAAGACCAATCTGAAAAACCAATGGCTAAAAAGTAAGTTTGTGGCCCAAGACTCCACAAGCCAAAAGACAGTCTAATAAAAACCTCAGCTTGAAAAAACAGCAGAAATACCCAATATTTATGACTTCAGTGTGCTTGTTAACAAGGTGCTCAATACAATACATATTTTAGTGCACTACTGCATAAAATCACTGCTTGCAAAGATCATAAAAAGTCAATTAAAGTCTGGTCACACaattccttgtgtgtgtgtgtgtacgaatgTGTGTGCTGTGCCTGTGTGCAAGTCTGCGAGAGTGTGGTTTCGGATGACTGAATAAATACTATTCAAATGCA

Function

GO:

id name namespace
GO:0005883 neurofilament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04572 NEFL, NF-L; neurofilament light polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437960 lncRNA upstream 439 28109165 ~ 28109383 (+) True G385592
TU437958 lncRNA upstream 6217 28103228 ~ 28103605 (+) True G385590
TU437911 lncRNA upstream 16449 28089671 ~ 28093373 (+) True G385543
TU437899 lncRNA upstream 123666 27985456 ~ 27986156 (+) True G385531
TU437873 lncRNA upstream 136039 27973567 ~ 27973783 (+) True G385512
TU437923 lncRNA downstream 55 28112834 ~ 28113437 (+) True G385555
TU438051 lncRNA downstream 13015 28125794 ~ 28126313 (+) False G385665
TU438050 lncRNA downstream 13075 28125854 ~ 28126313 (+) True G385665
TU438073 lncRNA downstream 26659 28139438 ~ 28139920 (+) True G385685
TU438074 lncRNA downstream 27647 28140426 ~ 28140916 (+) True G385686
XM_021602311.2 mRNA upstream 41849 28052624 ~ 28067973 (+) False LOC110523531
XM_036977178.1 mRNA upstream 41849 28052639 ~ 28067973 (+) False LOC110523531
XM_021602307.2 mRNA upstream 41849 28052640 ~ 28067973 (+) False LOC110523531
XM_021602310.2 mRNA upstream 41849 28052641 ~ 28067973 (+) True LOC110523531
XM_021602309.2 mRNA upstream 43816 28052621 ~ 28066006 (+) False LOC110523531
XM_021602325.2 mRNA downstream 115234 28228013 ~ 28235500 (+) False ftsj1
XM_036977196.1 mRNA downstream 115504 28228283 ~ 28235498 (+) True ftsj1
XM_021602327.2 mRNA downstream 126336 28239115 ~ 28241670 (+) True LOC110523538
XM_036977197.1 mRNA downstream 145188 28257967 ~ 28261576 (+) False LOC110518653
XM_036977198.1 mRNA downstream 145190 28257969 ~ 28261576 (+) True LOC110518653
TU437511 other upstream 205091 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 402744 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 426429 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 1446209 26661838 ~ 26663613 (+) True G383794
TU435244 other upstream 1649287 26437659 ~ 26460535 (+) True LOC110522865
TU438217 other downstream 303826 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 813498 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 1629021 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1784207 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 2174172 30286951 ~ 30287824 (+) True G388019

Expression Profile