RNA id: XM_036977197.1


Basic Information

Item Value
RNA id XM_036977197.1
length 2275
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC110518653
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28257967 ~ 28261576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggattgattataaaaattctttgccatgtttctgtcgatattatggatataatttggattttttttcgccgttgtcgtgaccgctatttccgttGGATTTCTCAACATAATGTGACCAACAAACAACTTTATTTGATCAATTAATCACAAGAGTTCTCATATTTGAAATAGCTGTGCTGTAGTTACCTATATTTTCAGTAAGTTTAATGTAGGGTGGACCACATGGACAGCCCCTTAGTGGTCAATGAAAATAAGGTCATTTTCTTCAGCCTCACTAGTGATCTGTCACAACATCACTCGTGAGTCTCCATATCCTCCTCTGTAGGTTTTTCTGTGTCCTACCAAACACACATCAGTTTTCTGACATGACAGTCTATGTGTGGAGTTCACTTCACTGACGGAAGAaagtggaaaatatgtatttttcttttatTCTTCTCATTTATGTTGCCGGTGTTGCGGTAAAAGAAAGTTGTGCAGATTTGGTTCCCACTCCCACTATTGTATTTTCCCCTGGGTACATCAATATagctacacctgctacagtacgaTGTGAGTCACCAAAAGGCACAGAGTGCAAATTCTACAAAGATCATGACCCCAACCCTATAAGGAAACTGGATTACAAGCAGGGTGCTTGCCAGTTCAAGTTGCTCTGGAATGAGTTCAAAAGGTGGAACAAGACTGAAGTAGATCTCAGCTGTGTAATTCTACAGAACAGAGAAGGTGAAACGATCAAAACCTCAAAACCTAGTGATGCTCGAAGACTTAATGTGGGTGATCCAATTGGAAAGCCCATTGTTCAGGTGTTGAAGATTGGGAATTACCTCAATCTTCGATGTGAGGCCAAGGCTGGCACCTCATGCTACTTTTATCTGAACAATGGTGACTCACACTTTAAAAAACGACCCTACAAAGACAATGTCTGTGTGGGGAGAGTGGCAGAAGAGGAACtgcagaggaagaggagcagtGCTGGAGAGATCTTCATCACCTGTGCTGTGGAGCTGGTGGTAGAGGGTGAAGATACTGTGACATCACAGCATAGTGAACCCCTCGGTATCACCATAGATGTTATAAATCCTCCAGGAGCTACTAGTTCCCCATCAACGTTCAGTTTACCTGTTCAGAATGAGAAAAGCAACGATACCACAGCCCAAGGAAGAGGTCCAGGGTTCCTCGTCGTCATCAGTCTGGGTGCTGGTTCCCTTTTCCTGATTCTGCTAGCTGGGTCTGTGCTGTGTGTTCTCCAACGCAAGTGTGGGGTTCAAGGCAGGCCTGTAAATACTGGAAGCCCACCTGAACAGCAAGACCAAACCCCACCTTGTGTCTATTCTGTCATCACAAAGCCTTCTAGGGATGAGGAAGAGGACACTAGTCTGCAATACGCTACAGTGACATATACCGGTGACCAAGCTAGTCGTCAATATGCAACAGTGACATCTACCGGTAACCAAGTTGGACCTGGGCGCACCAAGATCAAGTTTGAAATAGCTGGAGAGTACGCCCTCTTAGCAGAATCATAGAAGAAGAAACATTTACTGGATAACATGTTTTGCCATAGTTCACAGTTACAATCCTATATTTTGTTTTCATATTGGATCATAATTTACTCATAGTACAAAAACAAATCCTGCCACAACATCAAAGACTAAAGATATCTACTCAACTATTTGCATTTTAggttaaatgaaataaatgaaaagTACACTGTCTGAaacataaaataaatattttcctTCATTGAGTTACCGAATCTAGTCAGCAGTCACCAATCAGTAGTCACCAATCTATTTCACTCCTTGACAAGAGTCAATATAGACTCAAAGCCACAAGAGGGTAGAACACATGTCAAACTTTGCTTGTtacatctctacatctctctctctacatcgctCTCTTTAACCATGTCTGGTGTATATTAgttttcagtggtggaaaaagtactcaacaaacatacttaagtaaaagtaaagataccttcatagaaaatgactcaagtaatagtaaaagtcacccagtaaaattctacttgtgTAAAAGTCTATAAGTATTTGATttaaaatatacttcagtatcaaaagtgaATGTATAactcatttcaaattccttatctTAAGCAAACCAGAATGCACCATTTTCTTTTTATTCTTCTTTTTTGCAGAaggccaggggcacactccatcactcagccATCAGTTACAAACAAATCATGTcagtttagtgagtctgccagatcagaggcagtagggatgacaagggatgttcggctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438127 lncRNA upstream 1143 28253864 ~ 28256824 (+) True G385733
TU438124 lncRNA upstream 6632 28251023 ~ 28251335 (+) True G385730
TU438120 lncRNA upstream 12424 28245238 ~ 28245543 (+) True G385726
TU438107 lncRNA upstream 39739 28217811 ~ 28218228 (+) True G385715
TU438106 lncRNA upstream 42230 28215480 ~ 28215737 (+) True G385714
TU438221 lncRNA downstream 13381 28274957 ~ 28275246 (+) True G385809
TU438224 lncRNA downstream 15645 28277221 ~ 28277456 (+) True G385812
TU438228 lncRNA downstream 20785 28282361 ~ 28282569 (+) True G385816
TU438229 lncRNA downstream 22262 28283838 ~ 28284055 (+) True G385817
TU438231 lncRNA downstream 30505 28292081 ~ 28292281 (+) True G385819
XM_021602327.2 mRNA upstream 16297 28239115 ~ 28241670 (+) True LOC110523538
XM_021602325.2 mRNA upstream 22467 28228013 ~ 28235500 (+) False ftsj1
XM_036977196.1 mRNA upstream 22469 28228283 ~ 28235498 (+) True ftsj1
XM_021602316.2 mRNA upstream 145188 28109822 ~ 28112779 (+) True LOC110523534
XM_036977178.1 mRNA upstream 189994 28052639 ~ 28067973 (+) False LOC110523531
XR_005051706.1 mRNA downstream 201 28261777 ~ 28264335 (+) True LOC118964581
XM_036977199.1 mRNA downstream 8261 28269837 ~ 28346918 (+) False ank1b
XM_036977200.1 mRNA downstream 8261 28269837 ~ 28346918 (+) False ank1b
XM_036977201.1 mRNA downstream 8261 28269837 ~ 28346918 (+) False ank1b
XM_036977202.1 mRNA downstream 8262 28269838 ~ 28346918 (+) False ank1b
TU437511 other upstream 353236 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 550889 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 574574 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 1594354 26661838 ~ 26663613 (+) True G383794
TU435244 other upstream 1797432 26437659 ~ 26460535 (+) True LOC110522865
TU438217 other downstream 155029 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 664701 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 1480224 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1635410 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 2025375 30286951 ~ 30287824 (+) True G388019

Expression Profile